Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c05r
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate |Schizosacc...    82   1e-16
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    31   0.18 
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    28   1.3  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    28   1.3  
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       28   1.7  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    28   1.7  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        28   1.7  
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    28   1.7  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        28   1.7  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    27   3.8  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    26   5.1  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   8.9  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   8.9  

>SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 211

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 39/77 (50%), Positives = 54/77 (70%)
 Frame = -1

Query: 609 PMYESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLDDLSDAAIMELNL 430
           P  ESLK T ER LPY+ + IVP I +G+K++IAAHGNSLR ++  L+ L+   I++  L
Sbjct: 128 PNGESLKDTAERVLPYYKSTIVPHILKGEKVLIAAHGNSLRALIMDLEGLTGDQIVKREL 187

Query: 429 PTGIPFVYELDENLKPV 379
            TG+P VY LD++ K V
Sbjct: 188 ATGVPIVYHLDKDGKYV 204


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 577 KNPALLEQCYCASDQRRQEDH-YCCPW 500
           K+PA++EQC  +     Q DH YC PW
Sbjct: 133 KDPAVIEQCILSGVPPDQMDHVYCDPW 159


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
 Frame = -1

Query: 633 ADPKPEEFPMYESLKLTIERTLPYWNNVIVPQIKEGKKIIIA-AHGNSLRGIVKHLDDLS 457
           A+P  E  P Y++L    + T  Y     +P+ K+GK    A     S + I  H     
Sbjct: 98  AEPIEESSPSYQALSSMAKDTKTYLFGGSIPERKDGKLYNTAMVFDPSGKLIAVH----R 153

Query: 456 DAAIMELNLPTGIPFVYELDENLKPVDSMVFLGDE 352
              + ++++P G+ F     ++L P D+M  +  E
Sbjct: 154 KIHLFDIDIPGGVSF--RESDSLSPGDAMTMVDTE 186


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 594 LKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKHLDDLSDAAIME 439
           ++L + +TLP+  N I+   +E K +I  + GN    I  + D  +D    E
Sbjct: 1   MQLKLTKTLPFSENFIMADSEEYKTVIGISFGNQNSSIAFNRDGKTDVLANE 52


>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 149 YCIVLKILICIKHIWYMY 202
           YC+ +K+LI + + WY+Y
Sbjct: 42  YCLAVKLLIYLLYCWYIY 59


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 149 YCIVLKILICIKHIWYMY 202
           YC+ +K+LI + + WY+Y
Sbjct: 42  YCLAVKLLIYLLYCWYIY 59


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 149 YCIVLKILICIKHIWYMY 202
           YC+ +K+LI + + WY+Y
Sbjct: 42  YCLAVKLLIYLLYCWYIY 59


>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -1

Query: 600 ESLKLTIERTLPYWNNVIVPQIKEGKKIIIAAHGNSLRGIVKH 472
           E L     R L +W+  +VP   + K +I+  HG  +  +  H
Sbjct: 110 EGLSHLTSRLLKFWDEYVVPLQGKKKCVIVLCHGGVINVLRTH 152


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 149 YCIVLKILICIKHIWYMY 202
           YC+ +K+LI + + WY+Y
Sbjct: 42  YCLAVKLLIYLLYCWYIY 59


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 74  YLNIIMATLNKKSNKSKAYSFFK*IYCIVLKILICIKHIWYM 199
           Y  ++    N +    KA+S+F  + C    I +C  HI Y+
Sbjct: 649 YRELMEDAENWQCQHCKAFSYFSQVACSCKSITVCPLHIEYL 690


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 505 GSNNDLLAFFDLRHNNIVPVRQGSFN 582
           GSN DL     + H ++VPV Q S +
Sbjct: 184 GSNKDLKPLVLMGHQDVVPVNQASLD 209


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = +2

Query: 386 FKFSSSSYTKGMPVGRFNSMIAASLRSSKCFTIPLRLLPWAAIMIFLPSLI 538
           F    + Y     + + +S + ++ +  KCF +   +L  +AI++FL S++
Sbjct: 660 FSNLETCYESAKAIVQLSSKLLSAGQMDKCFYLEFEILYCSAIVLFLFSVM 710


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -1

Query: 708 FDVPPPAMEKDHPYYDTIVNDPRYAADPKPEEFPMYESLKLTIERTLP 565
           FD PP A++  H Y    +++ R  A P    F    ++ + ++   P
Sbjct: 466 FDPPPSAVKTSHNYGLPFLSNQRCPATPTRNPFAFENTVSIHMDGRQP 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,937,182
Number of Sequences: 5004
Number of extensions: 57746
Number of successful extensions: 149
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)