Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c05f
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate |Schizosacc... 146 3e-37
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos... 52 6e-08
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce... 35 0.008
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 31 0.097
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 28 1.2
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 2.1
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 27 2.1
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 26 4.8
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 6.4
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 6.4
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 6.4
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 25 6.4
>SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 211
Score = 146 bits (354), Expect(2) = 3e-37
Identities = 66/119 (55%), Positives = 87/119 (73%)
Frame = +2
Query: 113 IVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIAHTSVLKRAQI 292
+V+ RHGESEWN+ NLF GW D LS+ G +EA G+ LK+ GY+FDIA TS L+RAQ
Sbjct: 10 LVLTRHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLKSRGYKFDIAFTSALQRAQK 69
Query: 293 TLNSILKEIGQPDIPVEKTWRLNERHYGGLTGLNKAETAAKYGEAQVQIWRRSFDVPPP 469
T IL+E+G+P++ K+ +LNER+YG L GLNK + K+G QVQIWRRS+D+ PP
Sbjct: 70 TCQIILEEVGEPNLETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQIWRRSYDIAPP 128
Score = 24.2 bits (50), Expect(2) = 3e-37
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 551 PMYESLKLTIERTLPYW 601
P ESLK T ER LPY+
Sbjct: 128 PNGESLKDTAERVLPYY 144
>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 52.0 bits (119), Expect = 6e-08
Identities = 30/98 (30%), Positives = 53/98 (54%)
Frame = +2
Query: 110 KIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIAHTSVLKRAQ 289
K+ +IRHG+++ N++ + G D +L++ GR +A + L D S +KR +
Sbjct: 2 KVFLIRHGQTDQNKRGILQGSVDTNLNETGRLQAKLLAQRLLP--LDIDQIFCSSMKRCR 59
Query: 290 ITLNSILKEIGQPDIPVEKTWRLNERHYGGLTGLNKAE 403
T+ L+ +P++P+ T + ER YG L G+N E
Sbjct: 60 ETIAPYLEL--KPEVPIVYTDLIRERVYGDLEGMNVVE 95
>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 282
Score = 35.1 bits (77), Expect = 0.008
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Frame = +2
Query: 86 SNKMPAKYKIVMIRHGESEWNQKNLFCG-WFDADLSDKGRQEAVAAGKALKAEGYQFDIA 262
S++ +K+ +++RH ESE N + + G D++L+ G +A K+++
Sbjct: 47 SSQNDSKFTCLLVRHAESEHNVRGIRAGARIDSELTVHGYNQAKKLAKSIR--NLDIVCV 104
Query: 263 HTSVLKRAQITLNSILKEIGQPDIPVEKTWRLNERHYGGLTGLNKAETA 409
++S KRA+ T I K + P+ + L E+ G L G + TA
Sbjct: 105 YSSPQKRAKRTAEEITK---VANCPLYISDFLMEKDLGSLEGTSFRYTA 150
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 31.5 bits (68), Expect = 0.097
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +2
Query: 65 SRYEIYLSNKMPAKYKIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEA 211
SR YLSN + I + RHGES++N + G D+ LS +G + A
Sbjct: 193 SRIVYYLSNLRTRRRSIWLSRHGESQFNVEGKIGG--DSSLSPQGLKYA 239
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 53 SVICSRYEIYLSNKMPAKYKIVMIRHGESEWNQKNLFCGWFDADLSDKGRQE 208
S +CS YE+++ P+ IV H +E+ FC + A S+ G +E
Sbjct: 26 SPLCSEYELFIKELWPS---IVESFHNSTEFETAIRFCCYETARKSEIGLEE 74
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -1
Query: 481 FFHGRW-RNVEAAAPDLNLS--LPVFGSCLSLVQSSEATIMPLV 359
FF G W N A +N+ + VFGSCLS V SS I+P +
Sbjct: 349 FFQGLWFGNHLATTKRVNVGQVVTVFGSCLS-VASSLQQILPAI 391
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -1
Query: 472 GRWRNVEAAAPDLN-LSLPVFGSCLSLVQSSE 380
G W+N+ + PD+N LSL + + +S V S++
Sbjct: 308 GIWKNISVSIPDINSLSLKDYSAVVSRVISTD 339
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 68 RYEIYLSNKMPAKYKIVMIRHGESEWNQKNLFCG 169
R+ Y +N + AKY ++ E NQKN+ G
Sbjct: 40 RFLNYDNNALEAKYNEIITEEVSQEPNQKNVIVG 73
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 275 LKRAQITLNSILKEIGQPDIPVEKTWRLNERH 370
L R ++NS L IG+ + V W + +RH
Sbjct: 95 LSRVVDSVNSTLNNIGRGRLSVNGIWEIIDRH 126
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = +2
Query: 452 FDVPPPAMEKDHPYYDTIVNDPRYAADPKPEEFPMYESLKLTIERTLP 595
FD PP A++ H Y +++ R A P F ++ + ++ P
Sbjct: 466 FDPPPSAVKTSHNYGLPFLSNQRCPATPTRNPFAFENTVSIHMDGRQP 513
>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 6.4
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Frame = -3
Query: 416 IWQ-LSQPCSVQ*GHHNASRSISKF--------SQQVYLADRSPLR*SSV*SGHVLEQTC 264
+W+ ++ CS+ HH A +SI K+ +Q+ + LR SS S +L+Q
Sbjct: 2 VWRTIAGSCSLSAYHHTAKQSIDKYKSVLEEERKKQLLRTETGLLRQSSSRSSSLLDQRI 61
Query: 263 EQ--CQTDSLQLLKPYRQQQLLDDL 195
Q + ++ LL+ + LL ++
Sbjct: 62 RQITAKDKTVNLLRKTLNRPLLHEV 86
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 118 YDSSWRIRMEPEESLL 165
+D SW++R E ESLL
Sbjct: 15 FDKSWKVRFEAYESLL 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,869
Number of Sequences: 5004
Number of extensions: 48277
Number of successful extensions: 127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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