Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c05f
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0769 + 31616644-31616875,31616980-31617203,31617308-316174... 97 7e-21
11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,177... 57 1e-08
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172... 55 5e-08
06_01_0841 - 6379999-6380040,6380641-6380760,6380863-6380964,638... 53 2e-07
12_01_0228 - 1726856-1727049,1727280-1727355,1727454-1727585,172... 50 1e-06
11_01_0231 - 1791754-1791947,1792178-1792253,1792352-1792483,179... 50 1e-06
11_01_0309 + 2312786-2313211,2313311-2313527,2313613-2313731,231... 41 7e-04
01_01_0965 - 7589659-7589785,7590188-7590317,7590339-7590438,759... 40 0.002
04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680 33 0.23
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230... 29 2.8
02_04_0295 + 21682029-21683534 29 2.8
06_01_0172 + 1362101-1363708 29 3.8
04_04_0207 + 23602065-23604315,23604611-23605116 29 3.8
09_02_0258 - 6380702-6380758,6380767-6380794,6381352-6381467,638... 28 5.0
07_01_0885 + 7353926-7354770,7354845-7355487 27 8.7
>02_05_0769 +
31616644-31616875,31616980-31617203,31617308-31617426,
31617528-31617684,31617928-31618029,31618111-31618230,
31618761-31618855,31619900-31619984,31620090-31620180,
31620534-31620618,31620702-31620806,31621019-31621894,
31622016-31622124,31622266-31622414,31622518-31622737
Length = 922
Score = 97.5 bits (232), Expect = 7e-21
Identities = 60/153 (39%), Positives = 82/153 (53%), Gaps = 27/153 (17%)
Frame = +2
Query: 92 KMPAKYKIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIAHTS 271
K ++ +++IRHGES WN+KNLF G D L+ KG EA+ AGK + D+ +TS
Sbjct: 75 KKSSESALILIRHGESLWNEKNLFTGCVDVPLTPKGVDEAIEAGKRIC--NIPVDVIYTS 132
Query: 272 VL----------------KRAQITLNS-----------ILKEIGQPDIPVEKTWRLNERH 370
L K+ I ++S +E + IPV W+LNER
Sbjct: 133 SLIRAQMTAMLAMMQHRRKKVPIVVHSESEQAHRWSKIYSEETKKQSIPVITAWQLNERM 192
Query: 371 YGGLTGLNKAETAAKYGEAQVQIWRRSFDVPPP 469
YG L GLNK ETA ++G+ QV WRRS+D+PPP
Sbjct: 193 YGELQGLNKQETADRFGKEQVHEWRRSYDIPPP 225
>11_01_0229 -
1771701-1774164,1774694-1774847,1774980-1775055,
1775439-1775477,1778516-1778674,1778741-1778851,
1779014-1779064,1779173-1779256
Length = 1045
Score = 56.8 bits (131), Expect = 1e-08
Identities = 34/94 (36%), Positives = 51/94 (54%)
Frame = +2
Query: 110 KIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIAHTSVLKRAQ 289
++V++RHGE+ WN + G D +L++ G+Q+AV + L E I ++S LKRA
Sbjct: 10 ELVVVRHGETSWNASRIVQGQMDPELNEIGKQQAVVVARRLAREARPAAI-YSSDLKRAA 68
Query: 290 ITLNSILKEIGQPDIPVEKTWRLNERHYGGLTGL 391
T I K ++ + T L ERH G L GL
Sbjct: 69 ETAEIIAKACDVSNLML--TEALRERHMGYLQGL 100
>12_01_0227 -
1718726-1721183,1721804-1721957,1722090-1722165,
1722327-1722485,1722552-1722662,1722791-1722841,
1722948-1723192,1723745-1725278
Length = 1595
Score = 54.8 bits (126), Expect = 5e-08
Identities = 32/94 (34%), Positives = 52/94 (55%)
Frame = +2
Query: 110 KIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIAHTSVLKRAQ 289
++V++RHGE+ WN + G D +L++ G+Q+AV + L + I ++S LKRA
Sbjct: 575 ELVVVRHGETSWNSSRIVQGQMDPELNEIGKQQAVVVARRLARKARPAAI-YSSDLKRAA 633
Query: 290 ITLNSILKEIGQPDIPVEKTWRLNERHYGGLTGL 391
T+ I K ++ + + L ERH G L GL
Sbjct: 634 ETVKIIAKVCDVSNLVLIEA--LRERHMGYLQGL 665
>06_01_0841 -
6379999-6380040,6380641-6380760,6380863-6380964,
6381146-6381302,6381480-6381511
Length = 150
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +2
Query: 362 ERHYGGLTGLNKAETAAKYGEAQVQIWRRSFDVPPP 469
E YG L GLNK ETA ++G QV WRRS+D+PPP
Sbjct: 9 EVRYGELQGLNKQETADRFGNEQVHKWRRSYDIPPP 44
>12_01_0228 -
1726856-1727049,1727280-1727355,1727454-1727585,
1727665-1727775,1727892-1727942,1728114-1728275,
1729558-1729584
Length = 250
Score = 50.4 bits (115), Expect = 1e-06
Identities = 31/94 (32%), Positives = 49/94 (52%)
Frame = +2
Query: 110 KIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIAHTSVLKRAQ 289
++V++RHGE+ N + G D +L++ GRQ+AV + L E + ++S LKRA
Sbjct: 45 EVVVVRHGETSANALCIIQGQMDIELNEAGRQQAVMVARRLAKEAKPVAV-YSSDLKRAA 103
Query: 290 ITLNSILKEIGQPDIPVEKTWRLNERHYGGLTGL 391
T +I ++ + L ERH G L GL
Sbjct: 104 ETAQTIATACNVSNLVLSPA--LRERHMGDLHGL 135
>11_01_0231 -
1791754-1791947,1792178-1792253,1792352-1792483,
1792563-1792673,1792790-1792840,1793012-1793122
Length = 224
Score = 50.4 bits (115), Expect = 1e-06
Identities = 34/102 (33%), Positives = 53/102 (51%)
Frame = +2
Query: 110 KIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIAHTSVLKRAQ 289
++V++RHGE+ N + G D +L++ GRQ+AV + L E + ++S LKRA
Sbjct: 19 EVVVVRHGETSANALCIIQGQTDIELNEAGRQQAVMVARRLAKEAKPVAV-YSSDLKRAA 77
Query: 290 ITLNSILKEIGQPDIPVEKTWRLNERHYGGLTGLNKAETAAK 415
T +I ++ + L ERH G L GL K E A +
Sbjct: 78 ETAQTIATACNVSNLVLSPA--LRERHMGDLHGL-KFEDAVR 116
>11_01_0309 +
2312786-2313211,2313311-2313527,2313613-2313731,
2313921-2314019,2314498-2314551,2314635-2314733,
2314838-2314945,2315418-2315694,2316051-2316160,
2316425-2316493,2316608-2316714,2316754-2316792,
2317126-2317171,2317593-2317619
Length = 598
Score = 41.1 bits (92), Expect = 7e-04
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Frame = +2
Query: 110 KIVMIRHGESEWNQKNLFCGWFDAD-LSDKGRQEAVAAGKALKAEGYQFDIAHTSVLKRA 286
++V++RHG+S WN + G D L+ KG +A + L ++ FD TS L R+
Sbjct: 55 RVVLVRHGQSTWNAEGRIQGSSDISVLTPKGESQAETSRLMLLSD--SFDACFTSPLARS 112
Query: 287 QITLNSILKEIGQPDIPVEKTWRLNERHYGGLTGLNKAETAAKYGEAQVQIWRRS 451
+ T I + IP L E GL K E +YG Q W+++
Sbjct: 113 RRTAEIIWADRDDDLIPDSD---LREIDLYSFQGLLKNEGKERYGVIYRQ-WQKN 163
>01_01_0965 -
7589659-7589785,7590188-7590317,7590339-7590438,
7590524-7590643,7590910-7591145,7591585-7591714
Length = 280
Score = 39.9 bits (89), Expect = 0.002
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Frame = +2
Query: 83 LSNKM-PAKYKIVMIRHGESEWNQKNLFCGWFDAD-LSDKGRQEAVAAGKALKAEGYQFD 256
L+N+M KI ++RHG S WN ++ G + L++ G ++A AL +FD
Sbjct: 94 LTNEMLTLSKKITLVRHGLSTWNAESRVQGSSNLSVLTETGAKQAEKCRDAL--ANMKFD 151
Query: 257 IAHTSVLKRAQITLNSILKEIGQPDIPVEKTWRLNERHYGGLTGLNKA 400
+ +S + RA+ T I K +P I ++ L E H L G+ A
Sbjct: 152 VCFSSPISRAKSTAEIIWKGKEEPLIFLDS---LKEAHLFFLEGMTNA 196
>04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680
Length = 628
Score = 32.7 bits (71), Expect = 0.23
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Frame = +2
Query: 293 TLNSILKEIGQPDIPVEKTWRLNERHYGGLTGLNKAETAAKYGEAQV---QIWRRSFDVP 463
+L +I+ ++ PVEKT ++ YG L G N ET E + S
Sbjct: 310 SLPTIVDDVYSVPCPVEKTDSFSDIVYGALRGFNFLETGESIAEDSTLDSVVENSSMTDV 369
Query: 464 PPAMEKDHPYYDTIVNDPRYAADPKPEEFPMYESLKLTIERTL 592
+ EKD D I++D R + +SL ++R L
Sbjct: 370 QASEEKDEARSDDILSDERKIPVDQRSPVENSDSLSDPVDRAL 412
>04_04_0378 -
24822436-24822521,24822623-24822738,24823010-24823092,
24823772-24823918,24824004-24824051,24824153-24824353,
24824981-24825152,24825235-24825299,24825813-24825939,
24826436-24826528,24826608-24826696,24826804-24826950,
24827047-24827359,24827474-24828048
Length = 753
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Frame = +2
Query: 194 KGRQEAVAAGKALKAEG-YQFDIA-----HTSVLKRAQITLNSILKEIGQPDIPVEKTWR 355
KG +EA A KA + E + +IA +++++R L + KEI D + W+
Sbjct: 624 KGEEEARRAYKAAREESDHAAEIAAGEKVSSALIERVDAMLQKLEKEIDDVDARIGNRWQ 683
Query: 356 LNERHYGGLTGLNKAETAAKY 418
L + G ++ AA Y
Sbjct: 684 LLDSDRDGKVTPDEVAAAANY 704
>02_04_0295 + 21682029-21683534
Length = 501
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -2
Query: 591 RVLSIVSFRLSYIGNSSGFGSAAYLGSLTMVS*YG*SFSMAGGGTSK 451
+V IV++ S G FG A Y G L +VS S +MAG G+ +
Sbjct: 160 KVRDIVAYFRSRAGEEVVFGEAIYSGVLNLVSSSFFSVNMAGVGSEE 206
>06_01_0172 + 1362101-1363708
Length = 535
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -1
Query: 448 AAPDLNLSLPVFGSCLSLVQSSEATIMPLVQS 353
AAP L SLPVF + LS + +++ ++P V S
Sbjct: 83 AAPPLPPSLPVFAAVLSRLPAADPALLPPVLS 114
>04_04_0207 + 23602065-23604315,23604611-23605116
Length = 918
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/69 (21%), Positives = 28/69 (40%)
Frame = +2
Query: 137 SEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIAHTSVLKRAQITLNSILKE 316
S W++ +C W + G VA G +L+ G DIA + + + S+
Sbjct: 59 STWSRSTPYCNWSHVTCTAGGGGGGVAVGLSLQGLGLSGDIAAEPLCRVPGLAALSLASN 118
Query: 317 IGQPDIPVE 343
+P++
Sbjct: 119 TFNQTVPLQ 127
>09_02_0258 -
6380702-6380758,6380767-6380794,6381352-6381467,
6382318-6382435,6382542-6382721,6383214-6383313,
6384315-6384618
Length = 300
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +2
Query: 98 PAKYKIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIAHTSVL 277
P + +++++RHGES + D LS GR A++ L+ G+ ++ S
Sbjct: 80 PPRRRLILLRHGESAAGGR--LTRDHDRPLSKAGRAAAISVSNKLQQMGWIPELVLCSDA 137
Query: 278 KRAQITL 298
R + TL
Sbjct: 138 TRTKETL 144
>07_01_0885 + 7353926-7354770,7354845-7355487
Length = 495
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +2
Query: 278 KRAQITLNSILKEIGQPDIPVEKT-WRLNERHYGGLTGLNKAETAAKYGEAQVQIWRRSF 454
K+ + + S ++E + + T W + R GG T ++ T Y + +++W+
Sbjct: 168 KKLMLAMGSDMEEQWMRSLNLAVTNWIIETRRSGG-TPVSPF-TVFSYAVSAIRLWKVEL 225
Query: 455 DVPPPAMEKDHPYYDT 502
P AM +HP + T
Sbjct: 226 YCPVVAMIMEHPAHQT 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,063,850
Number of Sequences: 37544
Number of extensions: 334294
Number of successful extensions: 958
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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