Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c05f
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24103| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)                 28   6.6  
SB_33628| Best HMM Match : BRF1 (HMM E-Value=1.8)                      27   8.8  

>SB_24103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +2

Query: 185 LSDKGRQEAVAAGKALKAEGYQFDIAHTSVLKRAQITLNSILKEIGQPDIP---VEKTWR 355
           ++++G ++ +A  K+ KA G   D  H  VLK     ++ ILK+I Q  +    + + WR
Sbjct: 53  VTEEGVRKLLAGLKSSKAAGP--DSFHPRVLKECAPVISPILKQIFQKSLDAGNLPREWR 110

Query: 356 LNERH 370
           + +++
Sbjct: 111 IAKKY 115


>SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)
          Length = 534

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = +2

Query: 185 LSDKGRQEAVAAGKALKAEGYQFDIAHTSVLKRAQITLNSILKEIGQPDIP---VEKTWR 355
           ++++G ++ +A  K+ KA G   D  H  VLK   + ++ ILK+I Q  +    + + WR
Sbjct: 329 VTEEGVRKLLAGLKSSKAAGP--DGFHPRVLKECALVISPILKQIFQKSLDACNLPREWR 386

Query: 356 L 358
           +
Sbjct: 387 I 387


>SB_33628| Best HMM Match : BRF1 (HMM E-Value=1.8)
          Length = 369

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
 Frame = +2

Query: 389 LNKAETAAKYGEAQVQIWRRS--------FDVPPPAMEKDHPYYDTIVNDPRYAADPKPE 544
           L      AK  +A+ Q W R         +D PPPA+E+  P     V+      D   +
Sbjct: 156 LKALREGAKKKQAECQEWLRQVKEGSKLVYDPPPPAIEEVSPTRIDGVDGEPSPIDTLKK 215

Query: 545 EFPMYESLKLTIERTLPYW 601
               + SL    +  +PYW
Sbjct: 216 LAATHSSLSELSDAKMPYW 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,922,944
Number of Sequences: 59808
Number of extensions: 356905
Number of successful extensions: 963
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)