Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c05f
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61953-3|AAC48071.3|  491|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U23452-1|AAK31545.2|  284|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81054-11|CAB02888.1|  430|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z70683-7|CAA94593.1|  430|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U41558-2|AAK39245.2|  457|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>U61953-3|AAC48071.3|  491|Caenorhabditis elegans Hypothetical
           protein R08C7.5 protein.
          Length = 491

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 248 QFDIAHTSVLKRAQITLNSILKEIGQPDIPVEKTWRLNERHY 373
           QF+ A   V       LN + K++   D P E+  +L +R+Y
Sbjct: 42  QFEKASNKVFAELFAKLNDVAKKVATEDFPAEQLQKLIDRNY 83


>U23452-1|AAK31545.2|  284|Caenorhabditis elegans Hypothetical
           protein R07G3.5 protein.
          Length = 284

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 23/76 (30%), Positives = 33/76 (43%)
 Frame = +2

Query: 92  KMPAKYKIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIAHTS 271
           K  A   I +IRHG+   + +          L+  GR++A   GK L     +F     S
Sbjct: 90  KATATRNIFLIRHGQYHLDHEVKM-------LTPLGREQAELLGKRLANSDIKFTNMTMS 142

Query: 272 VLKRAQITLNSILKEI 319
            + RA  T N ILK +
Sbjct: 143 TMVRATETANIILKHL 158


>Z81054-11|CAB02888.1|  430|Caenorhabditis elegans Hypothetical
           protein F01D4.8 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = +2

Query: 206 EAVAAGKALKAEGYQFDIAHTSVLKRAQITLNSILKEIGQPDIPVEKTWR-LNERHY--G 376
           E V     +   GY +DI      +   +T N I + +  PDI      R LNE  Y  G
Sbjct: 281 EKVWRAPGIAGTGYGYDIVPIQYGETTSLTKNVINEAMKMPDIATVAAMRILNEMGYNAG 340

Query: 377 GLTGLN 394
             T LN
Sbjct: 341 ASTSLN 346


>Z70683-7|CAA94593.1|  430|Caenorhabditis elegans Hypothetical
           protein F01D4.8 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = +2

Query: 206 EAVAAGKALKAEGYQFDIAHTSVLKRAQITLNSILKEIGQPDIPVEKTWR-LNERHY--G 376
           E V     +   GY +DI      +   +T N I + +  PDI      R LNE  Y  G
Sbjct: 281 EKVWRAPGIAGTGYGYDIVPIQYGETTSLTKNVINEAMKMPDIATVAAMRILNEMGYNAG 340

Query: 377 GLTGLN 394
             T LN
Sbjct: 341 ASTSLN 346


>U41558-2|AAK39245.2|  457|Caenorhabditis elegans Hypothetical
           protein K02B2.1 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 31/118 (26%), Positives = 46/118 (38%)
 Frame = +2

Query: 65  SRYEIYLSNKMPAKYKIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEG 244
           SR   +L N       I + RHG+SE+N      G  D+ L++ G++ A A     + E 
Sbjct: 232 SRVVYFLMNIHLLPRSIYLTRHGQSEYNAMGRLGG--DSPLTEDGQKYASALADFFEEEE 289

Query: 245 YQFDIAHTSVLKRAQITLNSILKEIGQPDIPVEKTWRLNERHYGGLTGLNKAETAAKY 418
                   S   RA  T   +     +PD   E    L+E   G   GL   +   +Y
Sbjct: 290 VPGLRVWCSQKVRAAQTAQHL-----KPDFHTEYWKALDELDAGICEGLTYEDILQRY 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,343,458
Number of Sequences: 27780
Number of extensions: 272536
Number of successful extensions: 825
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)