Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c04r
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   268   2e-72
AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    29   5.0  
AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical...    29   5.0  
Z74030-19|CAA98449.2|  841|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z72508-10|CAA96644.2|  841|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical pr...    28   8.8  
AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascula...    28   8.8  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  268 bits (658), Expect = 2e-72
 Identities = 134/223 (60%), Positives = 159/223 (71%)
 Frame = -1

Query: 760 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 581
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 580 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 401
           FPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  E
Sbjct: 61  FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGE 120

Query: 400 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKI 221
           I GLTD  +PR+LGPKRASKIRKLFNL+K DDV +YV+       +G      +  APKI
Sbjct: 121 IEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDG----VTKTIAPKI 176

Query: 220 QRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKE 92
           QRL+TP  +                 +   A Y KLLA+  KE
Sbjct: 177 QRLITPARIARKKYLLRQKRNQKIKMRDDAAAYHKLLAKYSKE 219


>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 56  PAFDLFLATHLGFLLSLCKQFSIFSLRGLALSETLLLQSETMTSTL 193
           P F ++    +G L+++C Q SIFS+  L + +  +L ++     L
Sbjct: 70  PFFGIWFELIIGKLITMCYQLSIFSIGNLEIRKFYVLWTDDSNKML 115


>AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical
           protein F40G9.1 protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -1

Query: 742 YPATGCQKLFEVVDEHK---LRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 584
           Y   G  ++FE+  E K    RIF EK +   +   ++ ++     L++ G NDK+
Sbjct: 6   YLHVGLNRIFEIAKEKKNGKFRIFLEKNVKNVIFLQEIFEKSLFLCLKINGSNDKK 61


>Z74030-19|CAA98449.2|  841|Caenorhabditis elegans Hypothetical
           protein F28H7.10a protein.
          Length = 841

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
 Frame = +2

Query: 68  LFLATHLGFLLSLCKQFSIFSLR-GLALSETLLL-----QSETMTSTLQNYRGD*PLDLR 229
           L+L + LGF+   C     + LR   A +E L         ET ++   NY     +D +
Sbjct: 428 LWLRSLLGFIFFYCCFVCAYMLRPSSATTEHLTRGRINDDGETESTNSTNYLQWHAIDTQ 487

Query: 230 CLMSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFG 346
           C +  +S +  + GW     +I T I+   ++  L DFG
Sbjct: 488 CHLMYYSAWPWYHGWFRLGCEIMTIIVMLFQI--LLDFG 524


>Z72508-10|CAA96644.2|  841|Caenorhabditis elegans Hypothetical
           protein F28H7.10a protein.
          Length = 841

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
 Frame = +2

Query: 68  LFLATHLGFLLSLCKQFSIFSLR-GLALSETLLL-----QSETMTSTLQNYRGD*PLDLR 229
           L+L + LGF+   C     + LR   A +E L         ET ++   NY     +D +
Sbjct: 428 LWLRSLLGFIFFYCCFVCAYMLRPSSATTEHLTRGRINDDGETESTNSTNYLQWHAIDTQ 487

Query: 230 CLMSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFG 346
           C +  +S +  + GW     +I T I+   ++  L DFG
Sbjct: 488 CHLMYYSAWPWYHGWFRLGCEIMTIIVMLFQI--LLDFG 524


>Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical
           protein F25H5.5 protein.
          Length = 725

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 345 PKSVSCSTLAKKMMYVVMSSNACSQPRKEKKMLNPDIRHLRS 220
           PKS+  S   KK +   MS+    +  + +KM   D  HL++
Sbjct: 105 PKSLLTSETLKKKLQASMSAKRRKEQEQRRKMYEEDNEHLKA 146


>AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 2
           protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 727 CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 584
           C K F+   + ++    E+++  E E  Q  D W G  LR  G  DK+
Sbjct: 272 CVKFFKNYMQEEVVQNIERKLQFEREEQQELDSWTGKSLRAEGVEDKE 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,735,160
Number of Sequences: 27780
Number of extensions: 372938
Number of successful extensions: 1060
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)