Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c04f
(546 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 224 4e-59
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 223 1e-58
02_01_0295 - 1973115-1973404,1974138-1974663 29 1.8
02_05_0956 - 33064104-33066425 28 4.2
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 7.4
12_01_0203 + 1520079-1520302,1522346-1522405,1522794-1523016,152... 27 9.8
04_01_0377 - 4970034-4970687 27 9.8
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 27 9.8
03_02_0480 + 8785130-8785192,8785472-8785518,8786415-8786508,878... 27 9.8
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 224 bits (547), Expect = 4e-59
Identities = 107/172 (62%), Positives = 131/172 (76%), Gaps = 4/172 (2%)
Frame = +2
Query: 41 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 221 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 394
FPMKQGVLT+ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120
Query: 395 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGK 544
++PGLTD PR GPKRASKIRKLFNL+K+DDVR+YV +R K GK
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGK 172
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 223 bits (544), Expect = 1e-58
Identities = 107/172 (62%), Positives = 130/172 (75%), Gaps = 4/172 (2%)
Frame = +2
Query: 41 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 221 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 394
FPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120
Query: 395 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGK 544
++PGLTD PR GPKRASKIRKLFNLSK+DDVR+YV +R K GK
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGK 172
>02_01_0295 - 1973115-1973404,1974138-1974663
Length = 271
Score = 29.5 bits (63), Expect = 1.8
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +2
Query: 278 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGNVPRRLGPKR 451
G S + + G ++ RG + + S AL + GA PG +P R+G +
Sbjct: 167 GKSIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTK 224
Query: 452 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEG 541
+KIRKL + ++D++ ++K +P K G
Sbjct: 225 -TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253
>02_05_0956 - 33064104-33066425
Length = 773
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -3
Query: 535 LGWEHAFDDITTYIIFFAKV 476
+G EHA DD++TYII A V
Sbjct: 23 VGVEHATDDVSTYIIHVAHV 42
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 77 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLG 166
+KL+ E+ DE KLRI YEK+ D+ G
Sbjct: 494 KKLYQEIKDEEKLRILYEKKYRRLKSLDERG 524
>12_01_0203 +
1520079-1520302,1522346-1522405,1522794-1523016,
1523038-1523434,1523522-1523781,1523866-1524011,
1524044-1524317,1524501-1525547
Length = 876
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 5 FHG*RSTGLTAVMKLNVSYPATGCQKLFEVVDEHKLR 115
FHG RSTG++++ N+ + A L + + HK R
Sbjct: 447 FHGERSTGVSSLAPGNIRHLALQVNSLEQCQELHKYR 483
>04_01_0377 - 4970034-4970687
Length = 217
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +1
Query: 328 SSWMYC*RQSLGLGSCYCAQGCPGNSWID*WKCTPPSRSQTCFQN 462
S W YC GLGS +C GC + +C + C N
Sbjct: 123 SQWGYC-----GLGSEFCGNGCQSGACCPEKRCGKQAGGDKCPNN 162
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 130 LFVKDTKLVLVHHFEQLLASRCRVRNV*LHDCGQS 26
LF+ T V + F+ L RC V + LH C Q+
Sbjct: 76 LFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQN 110
>03_02_0480 +
8785130-8785192,8785472-8785518,8786415-8786508,
8786598-8786699,8786988-8787259,8787343-8787420,
8787648-8787894
Length = 300
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/39 (28%), Positives = 15/39 (38%)
Frame = -2
Query: 362 PRDWRQQYIHELIYVFSLHRGAVCNMSGPLTSEDEHGCL 246
PR W+ Y HRGA + E +HG +
Sbjct: 204 PRKWKTNKGQVFFYCLKRHRGASKKQGASMVEEVDHGTM 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,628,829
Number of Sequences: 37544
Number of extensions: 380567
Number of successful extensions: 1105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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