Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c03r
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 34 0.023
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 30 0.28
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 29 0.66
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.0
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 27 2.0
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 27 2.6
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 3.5
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 26 4.6
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 26 4.6
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 26 4.6
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 26 4.6
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 26 6.1
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom... 26 6.1
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 33.9 bits (74), Expect = 0.023
Identities = 20/92 (21%), Positives = 40/92 (43%)
Frame = +2
Query: 65 LESSLTEMSELFNARMAKFEAQLNKSSEPSITSSSLATEFSSFRTFITEALNNLQQQVET 244
L+ + E + L + +F QLN S+P T+ T SS + L + ++
Sbjct: 900 LKEQVEERNSLIKNIVTRF-TQLNTGSKPVNTNVEALTTISSMNQAVNMNFRELDKSIQE 958
Query: 245 LARMQDNTETRSRRKMLIIHGVTETKGEQIEQ 340
R + E + ++ + GV E + +++ Q
Sbjct: 959 FKRKCQSMEREFKTELRKLDGVLEARSKRLSQ 990
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 30.3 bits (65), Expect = 0.28
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +2
Query: 56 MNPLESSLTEM-SELFNARMAKFEA--QLNKSSEPSITSSSLATEF-SSFRTFITEALNN 223
M + S +TE+ + A+MA QL+ PS+T+S L+T+F S I AL N
Sbjct: 328 MGKVLSPVTELWKDTKTAKMAALSNLFQLSLLKNPSLTTSELSTQFQDSDLNDIRLALEN 387
Query: 224 LQQQV 238
LQ Q+
Sbjct: 388 LQSQM 392
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 29.1 bits (62), Expect = 0.66
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +2
Query: 65 LESSLTEMSELFNARMAKFEAQLNKSSEPSITSSSLATEFSSFRTFITEALNNLQQQVET 244
L S E+ +L NA++ K +++ + + S E SS + +TE L++Q+E+
Sbjct: 480 LSDSQEELLQL-NAKLEKANIVIDELNSAKLKLSKQVEEESSMKDDLTEMNQRLKEQIES 538
Query: 245 LARMQDNTETRSR 283
+ N+E SR
Sbjct: 539 YEN-EVNSEITSR 550
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 11 SLQSITSAHFTKLVTMNPLESSLTEMSELFNARMAKFEAQLNKSSEPSITSSSLAT 178
S S+ S+ + +P SSLT S ++ +A + + SITSSSLA+
Sbjct: 87 SSSSLASSSTNSTTSASPTSSSLTSSSAT-SSSLASSSTTSSSLASSSITSSSLAS 141
Score = 25.4 bits (53), Expect = 8.1
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +2
Query: 11 SLQSITSAHFTKL-VTMNPLESSLTEMSELFNARMAKFEAQLNKSSEPSITSSSLATEFS 187
S S TSA T +T + SS S ++ +A + + SITSSSLA+ +
Sbjct: 95 STNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSST 154
Query: 188 SFRTFITEALNNLQQQVET 244
+ + + + N+ T
Sbjct: 155 TSSSLASSSTNSTTSATPT 173
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = -2
Query: 640 SQNVDAAILGPDLLHAESTACSHENAVARLRQKLRNSKAGALQFC 506
S D I D H +S ACS V LRN K GA+ C
Sbjct: 101 STEKDIEIFSNDT-HEKSIACSDRQVVYADGSSLRNGKKGAVAGC 144
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 297 ISIFLRLRVSVLSCIRASVSTCCCKLLSASVINVRND 187
++ FL ++S + + STCCC L S ++ VR +
Sbjct: 172 VNDFLHHLYWLISDLTRNESTCCCVLCSGNMTRVRKN 208
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.6 bits (56), Expect = 3.5
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = +2
Query: 59 NPLESSLTEMSELFNARMAKFEAQLNKSSEPSITSSSLATEFSSFRTFITEALNNLQQQV 238
N + LT+++ N + + E +NKSSE E SS + LN L+ +
Sbjct: 859 NEQKLKLTKLNFQVN-ELEQLEKDINKSSEDCDLQKKKLLEVSSKQGSQAPFLNELESEY 917
Query: 239 ETLARMQDNTETRSRRKML 295
E L +SR ++L
Sbjct: 918 EKLEADIQEMAQKSRTEIL 936
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 635 KCRRSHPWSRPSSCRIYC 582
+ R HP+SRPSS R C
Sbjct: 670 RSNRHHPYSRPSSTRPQC 687
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 634 NVDAAILGPDLLHAESTACSHENAVARLRQKLRNSKAG 521
N D AIL D H + + C+ V R+ KL + AG
Sbjct: 102 NADKAILDDDQFHTDPSGCT-ATVVLRVGNKLYCANAG 138
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 601 LHAESTACSHENAVARLRQKLRNSKAGAL 515
LH +S S E+ + + +++RN KAG +
Sbjct: 564 LHTDSFYISRESTIMKRLEEIRNGKAGLI 592
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 685 IKISLREDSMFDAILSQNVDAAILGPDLLHAEST 584
I+++L ++ L +D AIL PDL+ ST
Sbjct: 58 IQVNLNNLKAVESALGAEIDGAILPPDLIKTIST 91
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/68 (23%), Positives = 30/68 (44%)
Frame = +2
Query: 59 NPLESSLTEMSELFNARMAKFEAQLNKSSEPSITSSSLATEFSSFRTFITEALNNLQQQV 238
N + S + + R+ +FE QL + S S +T F ++ + NL+++V
Sbjct: 502 NEIISKMLNSQDTAVHRIIEFEDQLARLSSVRNNSIKQSTTFQVKKSSQKSTIQNLEEKV 561
Query: 239 ETLARMQD 262
L + D
Sbjct: 562 SYLQQFMD 569
>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = +2
Query: 269 ETRSRRKMLIIHGVTETKGEQIEQALSDFISSRLAVAEFSTTDIKRCHRMKR 424
E + + + I+ G +E + +A F++ + +A FST D+K+ + R
Sbjct: 42 ELGNTKVLCIVDGPSEPVIKSKARADRTFVNVEINIASFSTIDVKKRFKSDR 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,542
Number of Sequences: 5004
Number of extensions: 54093
Number of successful extensions: 168
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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