Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c03r
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0764 + 19367257-19367664 30 1.6
09_04_0393 + 17255315-17256019,17256107-17257909 29 2.8
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 29 3.6
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 28 6.4
09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465 28 6.4
05_01_0299 - 2322204-2322734,2324089-2326164 28 6.4
02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438... 28 6.4
01_01_0636 + 4799257-4799640,4799758-4800011,4800646-4800998,480... 28 6.4
03_02_1012 + 13207907-13207990,13209196-13209280,13209402-132101... 28 8.4
03_05_0350 + 23368111-23368219,23368519-23368526,23368650-233686... 25 8.9
>04_03_0764 + 19367257-19367664
Length = 135
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 293 LIIHGVTETKGEQIEQALSDFISSRLAVAEFSTTDIKRCHRMKRLSASDGPRP 451
+++ ET E++E+ ++S AV FS + CH +KRL G P
Sbjct: 19 MVVAAAAETAAERVER-----LASESAVVVFSVSSCCMCHAVKRLFCGMGVHP 66
>09_04_0393 + 17255315-17256019,17256107-17257909
Length = 835
Score = 29.5 bits (63), Expect = 2.8
Identities = 25/124 (20%), Positives = 56/124 (45%)
Frame = +2
Query: 23 ITSAHFTKLVTMNPLESSLTEMSELFNARMAKFEAQLNKSSEPSITSSSLATEFSSFRTF 202
+ +H + LE + E+ +A+ E + K+ + + + AT ++
Sbjct: 286 LDKSHTETIQAQQDLELAEIRFEEMQQG-IARKERSITKA-KIEVANERRATALEDLQSV 343
Query: 203 ITEALNNLQQQVETLARMQDNTETRSRRKMLIIHGVTETKGEQIEQALSDFISSRLAVAE 382
E L+ LQ++ +L +DNTET++R+ ++ ++IE+ + D + + +
Sbjct: 344 KME-LDQLQKEYTSLISQRDNTETKARKAIV--------ASQEIEKVVQDLTIKVITMKD 394
Query: 383 FSTT 394
TT
Sbjct: 395 LITT 398
>03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = +3
Query: 84 RCQSCLMHVWRSLKLSSTSLQNPQSHHQAWQQNFHHFGHLLLRHSITYNSKWRRLLVCRT 263
R S L SL +SLQN + + + H GHL + NSK R L C+T
Sbjct: 859 RSNSKLQSTVESLIEECSSLQNQIAELKRQKLELH--GHLTQQEQELDNSKKRNLDFCKT 916
Query: 264 IQRLAA 281
++ L A
Sbjct: 917 VEFLEA 922
>12_02_1286 - 27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/105 (20%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Frame = +2
Query: 218 NNLQQQVETLARMQDNTETRSRRKMLIIHGVTETKGEQIEQALSDFISS--RLAVAEFST 391
+N++++++ L +++ ETR +K + + + E +++ DF S + E+
Sbjct: 771 SNIEEEIDRLEPVKEELETRIGKKEREVRVLEKKINEIVDRIYKDFSKSVGVKNIREYEE 830
Query: 392 TDIKRCHRMKRLSASDGPRPILVKFQ-TYEMRSQVWFSKTKLKGT 523
+K ++ S + +K+Q YE + + KLK T
Sbjct: 831 RQLKDAQALQERKLSLSNQMSKLKYQLEYEQKRDMQAPIIKLKET 875
>09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465
Length = 1058
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 389 TTDIKRCHRMKRLSASDG 442
T I RCHR++RLS DG
Sbjct: 291 TMGIARCHRIRRLSEDDG 308
>05_01_0299 - 2322204-2322734,2324089-2326164
Length = 868
Score = 28.3 bits (60), Expect = 6.4
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Frame = +2
Query: 209 EALNNLQQQVETLARMQD---NTETRSRRKMLIIHGVTETKGEQIEQALSDFISSRLAVA 379
E L++L+++ E R+Q+ N E +R+K+L + Q+E+A S S+R A
Sbjct: 560 EELHSLRKEKEEADRLQEERHNLEESTRKKLLEMESAISRANTQLEKAES---SARRREA 616
Query: 380 EFSTTDIK-RCHRMKRLSASDGPRPILVKFQTYEMRSQVWFSKTKL 514
E I+ + L ++ + K + RSQ W S+ L
Sbjct: 617 ENEQLRIQMEAAKRHALVSATNILELSKKDENSHKRSQHWESERAL 662
>02_05_1298 -
35542250-35542831,35543218-35543410,35543511-35543827,
35544144-35544186,35545845-35545900,35546028-35546102,
35546249-35546345,35546422-35546546,35547063-35547167,
35547295-35547432,35547758-35547831,35547995-35548065,
35548168-35548363,35548482-35548572,35549264-35549342,
35549431-35549491,35549745-35549814,35549913-35549987,
35550119-35550194,35550403-35550489,35550744-35550880,
35551000-35551063,35551351-35551415
Length = 958
Score = 28.3 bits (60), Expect = 6.4
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Frame = -2
Query: 700 VLLQTIKISLREDSMFDAILSQNVDAAILGPDLLH---AESTACSHEN-AVARLRQKLRN 533
V+L ++ D+M ILS+N+ A + PD+L + A S N LR+ +R
Sbjct: 613 VVLNILERLDTSDAMKTCILSKNMRATL--PDMLSRIAVDVAAFSRPNHRRLTLREVVRT 670
Query: 532 SKA----GALQFCFRKPNLTAHFICLEFY 458
+ A A FR+P + H + L FY
Sbjct: 671 NGAVADLTAAVLEFRRPEIPVHHLALRFY 699
>01_01_0636 +
4799257-4799640,4799758-4800011,4800646-4800998,
4801121-4801137
Length = 335
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 536 SEFLTKARHGIFMAARSRFGMKKVWTKDGCVYILG 640
S FLTK + I ++ GMK WT+DG I+G
Sbjct: 200 STFLTKDK-SIAEERAAKLGMKLEWTEDGVKTIMG 233
>03_02_1012 + 13207907-13207990,13209196-13209280,13209402-13210186,
13210262-13210462,13210580-13210690,13211105-13211487,
13211594-13211702,13211786-13211866,13212088-13212156,
13212379-13212467,13212619-13212780,13212859-13212916,
13213143-13213373,13213516-13213662,13213779-13214333,
13214562-13214819,13215096-13215203,13215760-13215854,
13215946-13216102,13216466-13216666,13217542-13217670,
13218292-13218567
Length = 1457
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 38 FTKLVTMNPLESSLTEMSELFNARMAKFEAQLNKSSEPSITSSSLATE 181
FT+L+ ++P+E+S LFN R+A + NK + L +E
Sbjct: 927 FTRLINLSPVEASFLATCSLFN-RLAFSAVRWNKKYTDELVDVFLDSE 973
>03_05_0350 +
23368111-23368219,23368519-23368526,23368650-23368658,
23368768-23368839,23368978-23369097,23369638-23370058,
23370131-23370285,23370461-23370625,23370822-23370825,
23371739-23371799,23371933-23372035,23372422-23372854,
23372978-23373120,23373608-23373740,23375567-23375576,
23375852-23375975,23376595-23377012,23377153-23377343,
23377569-23377811
Length = 973
Score = 25.0 bits (52), Expect(2) = 8.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -2
Query: 709 FRSVLLQTIKISLREDSMFDAILSQNVDAAILG 611
F+ V+ +TIK+ R FD +++ ++ +LG
Sbjct: 419 FKGVISKTIKLEPRSGYTFDVQVTKKLNILVLG 451
Score = 21.0 bits (42), Expect(2) = 8.9
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 592 ESTACSHENAVARLRQ 545
+ST+CS ENA+ + Q
Sbjct: 491 KSTSCSMENAIDHVGQ 506
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,827,262
Number of Sequences: 37544
Number of extensions: 352124
Number of successful extensions: 866
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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