Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c03r
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-22|CAD92402.1|  260|Caenorhabditis elegans Hypothetical...    33   0.15 
AL009246-6|CAA15834.1|  155|Caenorhabditis elegans Hypothetical ...    28   5.7  

>AL132876-22|CAD92402.1|  260|Caenorhabditis elegans Hypothetical
           protein Y105E8A.27 protein.
          Length = 260

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = +3

Query: 96  CLMHVWRSLKLSSTSLQNPQSHHQAWQQNFHHFGHLLLRHSITYNSKWRRLLVCRTIQRL 275
           C++H    + +  + L N   H + WQQN+   G  +    + Y  +W    +   +  L
Sbjct: 171 CIVHTVMQMVIWGSILLNMGWHRRVWQQNWLESGQTITEIPV-YPEEWLCFEIYAFLLLL 229

Query: 276 AAVEKC*LFMESLRLRVSKLN 338
             +  C LF E LR ++  +N
Sbjct: 230 LPILDCVLF-EHLRKKIRMMN 249


>AL009246-6|CAA15834.1|  155|Caenorhabditis elegans Hypothetical
           protein C47F8.7 protein.
          Length = 155

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +2

Query: 134 NKSSEPSITSSSLATEFSSFRTFITEALNNLQQQVETLARMQDNTETRSRRKM--LIIHG 307
           NKS  P   + ++ + + S   F  + +NNL ++V T A      E  S + +  L+   
Sbjct: 50  NKSDAPIYETFTIKSYYESETPFSDDDMNNLPEKVATSAVTSVLPEHTSEKNITRLVKQA 109

Query: 308 VTETKGEQIEQA 343
           + E  GE IE A
Sbjct: 110 LREGYGEFIEIA 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,524,440
Number of Sequences: 27780
Number of extensions: 311966
Number of successful extensions: 862
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)