Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c03f
         (573 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    25   0.46 
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    21   9.9  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   9.9  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -1

Query: 171 KLVLLISLIYFVLCFNCCSI---NLKTTCF 91
           K  ++  L+YF+L F C SI   N+ T  F
Sbjct: 159 KQPVVFDLVYFILAFACISIAYTNVSTDAF 188


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 415 PDLLHAESTACS 450
           PD LH E + CS
Sbjct: 68  PDALHTECSKCS 79


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 100 YLFFILQIV*IFVGTLILNNFNFKFG*VTVNDI 2
           Y   ++ I  + VG ++ + FN     VT+ND+
Sbjct: 56  YFLRMVLIDLLIVGCILKHIFNILMKNVTLNDV 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,229
Number of Sequences: 336
Number of extensions: 2437
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)