Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c03f
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    27   1.5  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    26   3.4  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    26   3.4  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    26   3.4  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    26   3.4  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   6.0  

>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = +1

Query: 385 SQNVDAAILGPDLLHAESTACSHENAVARLRQKLRNSKAGALQFC 519
           S   D  I   D  H +S ACS    V      LRN K GA+  C
Sbjct: 101 STEKDIEIFSNDT-HEKSIACSDRQVVYADGSSLRNGKKGAVAGC 144


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 390 KCRRSHPWSRPSSCRIYC 443
           +  R HP+SRPSS R  C
Sbjct: 670 RSNRHHPYSRPSSTRPQC 687


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 391 NVDAAILGPDLLHAESTACSHENAVARLRQKLRNSKAG 504
           N D AIL  D  H + + C+    V R+  KL  + AG
Sbjct: 102 NADKAILDDDQFHTDPSGCT-ATVVLRVGNKLYCANAG 138


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 424 LHAESTACSHENAVARLRQKLRNSKAGAL 510
           LH +S   S E+ + +  +++RN KAG +
Sbjct: 564 LHTDSFYISRESTIMKRLEEIRNGKAGLI 592


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 340 IKISLREDSMFDAILSQNVDAAILGPDLLHAEST 441
           I+++L      ++ L   +D AIL PDL+   ST
Sbjct: 58  IQVNLNNLKAVESALGAEIDGAILPPDLIKTIST 91


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 271 LCNSAFRSSINLWDCFRSVLLQTIKISLREDSM 369
           L +S+  ++I LWDC + V   ++K+ +   SM
Sbjct: 150 LASSSADNTIKLWDCEKGVAHVSLKMDVMCQSM 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,001
Number of Sequences: 5004
Number of extensions: 36920
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)