Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c03f
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438... 28 4.6
01_01_0636 + 4799257-4799640,4799758-4800011,4800646-4800998,480... 28 4.6
03_05_0350 + 23368111-23368219,23368519-23368526,23368650-233686... 25 6.6
07_03_1384 + 26177053-26177227,26178754-26178823,26179427-261794... 27 8.0
06_03_0951 - 26269386-26269394,26269501-26269609,26272761-262731... 27 8.0
01_06_0840 + 32343700-32344138,32345329-32345419,32345584-323458... 27 8.0
>02_05_1298 -
35542250-35542831,35543218-35543410,35543511-35543827,
35544144-35544186,35545845-35545900,35546028-35546102,
35546249-35546345,35546422-35546546,35547063-35547167,
35547295-35547432,35547758-35547831,35547995-35548065,
35548168-35548363,35548482-35548572,35549264-35549342,
35549431-35549491,35549745-35549814,35549913-35549987,
35550119-35550194,35550403-35550489,35550744-35550880,
35551000-35551063,35551351-35551415
Length = 958
Score = 28.3 bits (60), Expect = 4.6
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Frame = +1
Query: 325 VLLQTIKISLREDSMFDAILSQNVDAAILGPDLLH---AESTACSHEN-AVARLRQKLRN 492
V+L ++ D+M ILS+N+ A + PD+L + A S N LR+ +R
Sbjct: 613 VVLNILERLDTSDAMKTCILSKNMRATL--PDMLSRIAVDVAAFSRPNHRRLTLREVVRT 670
Query: 493 SKA----GALQFCFRKPNLTAHFICLEFY 567
+ A A FR+P + H + L FY
Sbjct: 671 NGAVADLTAAVLEFRRPEIPVHHLALRFY 699
>01_01_0636 +
4799257-4799640,4799758-4800011,4800646-4800998,
4801121-4801137
Length = 335
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 489 SEFLTKARHGIFMAARSRFGMKKVWTKDGCVYILG 385
S FLTK + I ++ GMK WT+DG I+G
Sbjct: 200 STFLTKDK-SIAEERAAKLGMKLEWTEDGVKTIMG 233
>03_05_0350 +
23368111-23368219,23368519-23368526,23368650-23368658,
23368768-23368839,23368978-23369097,23369638-23370058,
23370131-23370285,23370461-23370625,23370822-23370825,
23371739-23371799,23371933-23372035,23372422-23372854,
23372978-23373120,23373608-23373740,23375567-23375576,
23375852-23375975,23376595-23377012,23377153-23377343,
23377569-23377811
Length = 973
Score = 25.0 bits (52), Expect(2) = 6.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 316 FRSVLLQTIKISLREDSMFDAILSQNVDAAILG 414
F+ V+ +TIK+ R FD +++ ++ +LG
Sbjct: 419 FKGVISKTIKLEPRSGYTFDVQVTKKLNILVLG 451
Score = 21.0 bits (42), Expect(2) = 6.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 433 ESTACSHENAVARLRQ 480
+ST+CS ENA+ + Q
Sbjct: 491 KSTSCSMENAIDHVGQ 506
>07_03_1384 +
26177053-26177227,26178754-26178823,26179427-26179469,
26179888-26179965,26180010-26180027,26180103-26180187,
26180273-26180355,26180489-26180546,26181258-26181368,
26181769-26181826,26182005-26182101,26182585-26182620,
26183107-26183137,26183993-26184046,26184159-26184301,
26184411-26184560,26185084-26185317,26185450-26185509,
26185974-26186204,26186829-26186981
Length = 655
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/79 (25%), Positives = 35/79 (44%)
Frame = -1
Query: 555 TYEMRSQVWFSKTKLKGTGFTVSEFLTKARHGIFMAARSRFGMKKVWTKDGCVYILGEDG 376
T +RS K +++ +GF ++LT R G + + M +W K EDG
Sbjct: 548 TKSIRSAGNSVKQRIQSSGFHFGDYLTDPRIGPALLMSACISMGIIWYKSNQRTQTTEDG 607
Query: 375 IKHRVFTQRDLDRLQKNTS 319
+ T++ R + +TS
Sbjct: 608 APPKDKTKKRRPRPKLSTS 626
>06_03_0951 -
26269386-26269394,26269501-26269609,26272761-26273149,
26273592-26273852,26275067-26275245,26275329-26275467
Length = 361
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 505 ALQFCFRKPNLTAHFICLEFY 567
AL FC +P+LT F+C Y
Sbjct: 281 ALVFCMEQPSLTGRFLCSAAY 301
>01_06_0840 +
32343700-32344138,32345329-32345419,32345584-32345866,
32346023-32346097,32346470-32346514,32346889-32346979,
32347060-32347118,32347621-32347704,32348109-32348168,
32348585-32348637,32348724-32348757,32349334-32350335,
32350477-32351035,32351873-32352372,32352793-32353200
Length = 1260
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 384 LPKCRRSHPWSRPSSCRIYCVQP 452
+P+ H W + SC+I C QP
Sbjct: 312 VPQYILDHMWGKGESCKIVCTQP 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,125,623
Number of Sequences: 37544
Number of extensions: 236482
Number of successful extensions: 503
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -