Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c03f
(573 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17) 37 0.010
SB_53000| Best HMM Match : Transposase_22 (HMM E-Value=0.026) 37 0.010
SB_27138| Best HMM Match : Ebp2 (HMM E-Value=1.8) 31 0.51
SB_42267| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=5.9e-12) 29 3.6
SB_36769| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_2892| Best HMM Match : RasGAP_C (HMM E-Value=0.83) 28 6.2
SB_55110| Best HMM Match : Squash (HMM E-Value=0.21) 27 8.2
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12) 27 8.2
>SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17)
Length = 262
Score = 37.1 bits (82), Expect = 0.010
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Frame = -1
Query: 573 ILVKFQTYEMRSQVWFSKTKL--KGTGFTVSEFLTKARHGIFMAARSRFGMKKVWTKDGC 400
I+ KF + +++++ K L K V+E LTK R A S+ + K+WT DG
Sbjct: 170 IICKFVRHNIKAKILKEKKSLREKKDKLRVNEDLTKGRLDAIKAINSKLDIYKLWTIDGT 229
Query: 399 VYI---LGEDGIKHRVFTQRDLDRLQK 328
+++ +D K + + R L LQ+
Sbjct: 230 IHVRLNKDKDKAKEIIHSLRQLKDLQQ 256
>SB_53000| Best HMM Match : Transposase_22 (HMM E-Value=0.026)
Length = 301
Score = 37.1 bits (82), Expect = 0.010
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Frame = -1
Query: 573 ILVKFQTYEMRSQVWFSKTKL--KGTGFTVSEFLTKARHGIFMAARSRFGMKKVWTKDGC 400
I+ KF + +++++ K L K V+E LTK R A S+ + K+WT DG
Sbjct: 209 IICKFVRHNIKAKILKEKKSLREKKEKLRVNEDLTKGRLDAIKAINSKLDIYKLWTIDGT 268
Query: 399 VYI---LGEDGIKHRVFTQRDLDRLQK 328
+++ +D K + + R L LQ+
Sbjct: 269 IHVRLNKDKDKAKEIIHSLRQLKDLQQ 295
>SB_27138| Best HMM Match : Ebp2 (HMM E-Value=1.8)
Length = 841
Score = 31.5 bits (68), Expect = 0.51
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1
Query: 498 FTVSEFLTKARHGIFMAARSRFGMKKVWTKDGCVYI-LGEDGIKHRVFTQRDLDRLQK 328
F V+E LTK R A + + K+WT D + + L +D K + + R L LQ+
Sbjct: 739 FRVNEDLTKGRLDAIKAINVKLDIYKLWTIDVTIQVRLNKDKAKEIIHSLRQLKDLQQ 796
>SB_42267| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=5.9e-12)
Length = 902
Score = 28.7 bits (61), Expect = 3.6
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = -1
Query: 570 LVKFQ-TYEMRSQVWFSKTKLKGTGFTVSEFLTKARHGIFMAARSRFGMKK-VWTKDGCV 397
+++FQ + E ++V +K FT+ +F+T+A + R G++K TKD V
Sbjct: 500 VIQFQLSGEQANKVIVKTVSVKPPIFTIEDFITEAECKHIIMYAKRLGLEKSPLTKDSVV 559
Query: 396 YILGEDGIKHRVFTQRDLD 340
ED R F + D D
Sbjct: 560 I---EDETSMRTFKKWDWD 575
>SB_36769| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 481 SDEGAPRHFHGCTQ*IRHEEGLDQGWLRLHFG 386
+DEG H HG + + + G+ GW LH G
Sbjct: 4 ADEGVASHAHGEDKGVEKQAGVADGWGVLHKG 35
>SB_2892| Best HMM Match : RasGAP_C (HMM E-Value=0.83)
Length = 333
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 385 SQNVDAAILGPDLLHAESTACSHENAVARLRQKLRNSKAGALQ 513
+Q++DA + LH E T C +EN + + ++++N LQ
Sbjct: 146 AQDIDAKLEATRRLHQEETIC-YENQINEVNEEIQNETDIGLQ 187
>SB_55110| Best HMM Match : Squash (HMM E-Value=0.21)
Length = 573
Score = 27.5 bits (58), Expect = 8.2
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +1
Query: 319 RSVLLQTIKISLREDSMFDAILSQNVDAAILGPDLLHAESTACSHENAVARLRQKLRNSK 498
R+V L + R +M ++++ D ++ LHA + A SH ++R + + +K
Sbjct: 130 RAVNLDVLCYCDRGFAMITSLIALPCDPCVIR---LHA-NCAFSHYKLISRAKDVVLEAK 185
Query: 499 AGALQFCFRKPNLT 540
A +QF FR+ NLT
Sbjct: 186 AFLVQFFFRE-NLT 198
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 471 ARHGIFMAARSRFGMKKVWTKDGCVYI 391
A + I MAA +R G+ K W +GC +I
Sbjct: 1319 AEYCIKMAAFTRVGLTKNWKSNGCSWI 1345
>SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12)
Length = 446
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 259 YYSRLCNSAFRSSINLWDCFRSVLLQTIKISLR 357
Y + +CN S++ LW V L+TI LR
Sbjct: 99 YMANICNKVIYSNVELWIEILCVCLETIPPQLR 131
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,739,460
Number of Sequences: 59808
Number of extensions: 274880
Number of successful extensions: 747
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -