Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c03f
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42437-4|AAA83498.2|  349|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z73978-2|CAA98292.2|  728|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    27   9.5  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    27   9.5  

>U42437-4|AAA83498.2|  349|Caenorhabditis elegans Hypothetical
           protein F30B5.7 protein.
          Length = 349

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 232 VTVII-LFPVLFIRVQNMGQNEISSPYFSHLFCF 134
           VT  I + P+  +RV    QNE    Y S+L CF
Sbjct: 18  VTAAIGIVPLFIVRVMKRSQNESEQGYLSYLTCF 51


>Z73978-2|CAA98292.2|  728|Caenorhabditis elegans Hypothetical
           protein ZC302.1 protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 388 QNVDAAILGPDLLHAESTACSHENAVAR-LRQKLRNSKAGALQF 516
           Q VD  +LG DL H  + +   ++ V + LRQ   N    AL+F
Sbjct: 103 QKVDMILLGGDLFHENNPSREVQHRVTQLLRQYCLNGNPIALEF 146


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
            protein F52C9.1a protein.
          Length = 1336

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 298  INLWDCFRSVLLQTIKISLREDSMFDAILSQNVDAAIL 411
            +++WD FR+ LL  ++   +E S  + +  +NVD  IL
Sbjct: 1175 LHVWDPFRTTLLAQMEWDSKEGSGGNIMRVENVDRHIL 1212


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
            protein F52C9.1b protein.
          Length = 1331

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 298  INLWDCFRSVLLQTIKISLREDSMFDAILSQNVDAAIL 411
            +++WD FR+ LL  ++   +E S  + +  +NVD  IL
Sbjct: 1175 LHVWDPFRTTLLAQMEWDSKEGSGGNIMRVENVDRHIL 1212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,794,164
Number of Sequences: 27780
Number of extensions: 218340
Number of successful extensions: 483
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)