Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c01r
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0589 + 26449184-26450500,26452220-26452310,26452428-264525... 36 0.045
06_03_0137 + 17066914-17067505,17067588-17067904 33 0.32
04_04_1049 + 30414545-30414596,30414732-30414853,30415121-304151... 31 0.74
07_03_1184 - 24628848-24629294 31 1.3
03_06_0099 - 31645398-31645955 31 1.3
03_06_0031 + 31178063-31178323,31178975-31179093,31179182-311793... 31 1.3
09_03_0139 + 12692844-12694982 29 3.9
10_04_0022 + 7687383-7687670,7688479-7688556,7689456-7689535,768... 28 6.9
09_04_0091 - 14529255-14529935,14531220-14531630 28 6.9
06_01_0267 - 1972988-1973148,1973275-1973403,1973881-1974024,197... 28 6.9
04_04_0829 + 28487781-28488128,28489312-28489404 28 6.9
03_05_0162 + 21413354-21413369,21413651-21413973 28 6.9
02_05_0559 - 29953309-29953722,29953852-29953938,29954280-299543... 28 6.9
01_06_0275 - 28081849-28082238 28 6.9
01_05_0792 - 25275013-25275551,25275715-25275907 28 9.1
>04_04_0589 +
26449184-26450500,26452220-26452310,26452428-26452585,
26452670-26452768,26453296-26453345,26453654-26453705,
26453773-26454058,26454286-26454400,26454938-26455020,
26455381-26455466
Length = 778
Score = 35.5 bits (78), Expect = 0.045
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
Frame = +2
Query: 224 GHSAVTARSQCGHSAVTVRSQRGHSAVTARSQCGHS-AVTVRSQRGHSAVTARSQCGHSA 400
G S + + + S G SA+ RS S T +RG + R+ G
Sbjct: 190 GRSPIVQELMRRQNVASSGSSNGASALIQRSSSDSSNGATRHRRRGSWLRSIRNVAGSMV 249
Query: 401 VTVRSQRGHSAVTARSQSGGRRRG---DVAQGSAQVPQSRPGRVRAR 532
V R +R S+ GGRR D +Q SA + P RV+ R
Sbjct: 250 VGSRDRRSSDEKDTSSEKGGRRSSSATDDSQESASAVRRGPERVKVR 296
>06_03_0137 + 17066914-17067505,17067588-17067904
Length = 302
Score = 32.7 bits (71), Expect = 0.32
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 362 SAVTARSQCGHSAVTVRSQRGHSAVTARSQSGGRRRGDVAQGSAQVPQSRP-GRVRARV 535
+ + R + H A R + +V AR++ GGRR G + SA+V GR+R RV
Sbjct: 89 AGASPRKRGDHQAALARLRAAVLSVLARARRGGRRAGGGSSASARVLTGTVFGRLRGRV 147
>04_04_1049 +
30414545-30414596,30414732-30414853,30415121-30415198,
30415329-30415459,30415644-30417552,30417797-30417836,
30418194-30418259,30418583-30418734
Length = 849
Score = 31.5 bits (68), Expect = 0.74
Identities = 32/118 (27%), Positives = 44/118 (37%)
Frame = +2
Query: 212 RSQRGHSAVTARSQCGHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAVTARSQCG 391
R RG +A T S +AVT+RS S+ + A + R A AR G
Sbjct: 233 RGGRGAAATTKLSSSTDAAVTIRSSIRPSSREFMERSPRRAGEAENDRKEVADAARPSRG 292
Query: 392 HSAVTVRSQRGHSAVTARSQSGGRRRGDVAQGSAQVPQSRPGRVRARVSAEG*SRGRI 565
+ R +++ S + RG A P + RV AEG S RI
Sbjct: 293 ELSSMERGSSSRRSLSREPSSAVQERGHGPHRGASPPAA------MRVGAEGSSTRRI 344
>07_03_1184 - 24628848-24629294
Length = 148
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 422 GHSAVTARSQSGGRRRGDVAQGSAQVPQSRPGRVRAR-VSAE 544
G++ G ++RG A G + P SRP VRA+ ++AE
Sbjct: 22 GYTPTRVARDHGKKKRGTTAGGGTEHPPSRPAPVRAKSIAAE 63
>03_06_0099 - 31645398-31645955
Length = 185
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 386 CGHSAVTVRSQRGHSAVTARSQSGGRRRGDVAQGSAQVPQSRPGRVR-ARVSA 541
CG S V G +A ARS S GRR+G++ + + G++ A +SA
Sbjct: 27 CGQSDVASPRGGGGAAAAARSSSSGRRQGELHRIFQHFDRDNDGKISGAELSA 79
>03_06_0031 +
31178063-31178323,31178975-31179093,31179182-31179368,
31179455-31179601,31179686-31179802,31180017-31180307
Length = 373
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -3
Query: 543 SADTRARTRPGRLCGTCAE--PC-ATSPLRRPPLCDRAVTAL*PRCD 412
+A R ++R GR G+CA PC SP RR LC RA A P D
Sbjct: 16 AATARPQSRSGRH-GSCAARVPCPGPSPFRRGRLCARAAVAGPPEVD 61
>09_03_0139 + 12692844-12694982
Length = 712
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = +3
Query: 198 RNAQCGHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAVTARSQCGHSAVTV 365
R A+ A V SQ G A A + SA + RS R HS S C H V
Sbjct: 592 RIAEQPSGAAAVLSQPGLVARLAEALAASSASSSRSARDHSVSLLASLCRHGGAKV 647
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = +1
Query: 244 AVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAVTARSQCGHSAVTV 387
A V SQ G A A + SA + RS R HS S C H V
Sbjct: 600 AAAVLSQPGLVARLAEALAASSASSSRSARDHSVSLLASLCRHGGAKV 647
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = +2
Query: 266 AVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAVTARSQCGHSAVTV 409
A V SQ G A A + SA + RS R HS S C H V
Sbjct: 600 AAAVLSQPGLVARLAEALAASSASSSRSARDHSVSLLASLCRHGGAKV 647
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = +3
Query: 288 AVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAVTARSQCGHSAVTV 431
A V SQ G A A + SA + RS R HS S C H V
Sbjct: 600 AAAVLSQPGLVARLAEALAASSASSSRSARDHSVSLLASLCRHGGAKV 647
>10_04_0022 +
7687383-7687670,7688479-7688556,7689456-7689535,
7689876-7690095,7690444-7690677
Length = 299
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 341 VRSQRGHSAVTARSQCGHSAVTVRSQRGHSAVTARSQSGGRRRGDVAQGSAQV 499
+R +RG VTAR + + + RG A R Q+ +R A+GS V
Sbjct: 44 LRWRRGGPPVTARGPQATARQPLATMRGSQAAARRLQATAQRPSATARGSQAV 96
>09_04_0091 - 14529255-14529935,14531220-14531630
Length = 363
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 401 VTVRSQRGHSAVTARSQSGGRRRGDVAQGSAQVPQSRPGRVRAR 532
V R QRG +A S GG + V G Q+ GRV AR
Sbjct: 53 VVTRQQRGGAAAAEGSSRGGGGKPAVVSGLLGSLQAELGRVTAR 96
>06_01_0267 -
1972988-1973148,1973275-1973403,1973881-1974024,
1974368-1974493,1974595-1974720,1975149-1975241,
1975465-1975606,1976747-1976878,1976943-1977080,
1977431-1977523,1978186-1978389,1978568-1978656,
1978839-1978988,1979088-1979253,1979355-1979576,
1979687-1979872,1980289-1980411,1980511-1980611,
1982005-1982155
Length = 891
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 182 CVNDLTKRSVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQRGH 361
C ND + +R + G A+ +CGH V + RG + ++C A T ++ G
Sbjct: 745 CGNDKLQTRLRGEGGIKALLGMVKCGHPDVLAQVARG---IANFAKCESRAATQGNKVGK 801
Query: 362 S 364
S
Sbjct: 802 S 802
>04_04_0829 + 28487781-28488128,28489312-28489404
Length = 146
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 422 GHSAVTARSQSGGRRRGDVAQGSAQVPQSRPGRVRA 529
G++ G ++RG A G + P SRP VRA
Sbjct: 22 GYTLARVARDRGKKKRGMAAGGGTERPPSRPAPVRA 57
>03_05_0162 + 21413354-21413369,21413651-21413973
Length = 112
Score = 28.3 bits (60), Expect = 6.9
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +2
Query: 311 RSQCGHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAVTARSQSGGRRRGDVAQGS 490
+S+ G A + S G SAV AV G ++ GRR G+ AQG+
Sbjct: 13 KSRSGEEARRLLSDGG-SAVVHGGGTAMPAVHGGGAAGEHRAASQRGGQGRRCGEEAQGA 71
Query: 491 AQVP--QSRPGRVRARVSA 541
A+ P +R G R V+A
Sbjct: 72 ARRPVALARQGAARRPVAA 90
>02_05_0559 -
29953309-29953722,29953852-29953938,29954280-29954385,
29954468-29954559,29955187-29955438
Length = 316
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -3
Query: 546 PSADTRARTRPGRLCGTCAEPCATSPLRRPPLCDRA 439
P+AD R + R C P TS RRPP C RA
Sbjct: 18 PAADMRLPSADARRC-----PADTSACRRPPPCRRA 48
>01_06_0275 - 28081849-28082238
Length = 129
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 410 RSQRGHSAVTARSQSGGRRRGDVAQGS--AQVPQSRPGRVRARVSAEG*SRG 559
R R TA + +GGRRR ++ + VP S PGR A SA + G
Sbjct: 7 RGMRHDDYATAAAATGGRRRKRCSKNTEAGSVPASVPGRRGAEHSAAAAATG 58
>01_05_0792 - 25275013-25275551,25275715-25275907
Length = 243
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 416 QRGHSAVTARSQSGGRRRGDVAQGSAQVPQSRPGRVRARVSAEG 547
QRG AV + GRRRG Q +A+ P + V V G
Sbjct: 192 QRGALAVAMVAAVAGRRRGGCGQSAARWPSAAAATVVVTVCTVG 235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,662,087
Number of Sequences: 37544
Number of extensions: 285542
Number of successful extensions: 1274
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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