Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c01r
(749 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 32 0.50
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 32 0.50
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 32 0.50
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 32 0.50
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 32 0.50
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 32 0.50
AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical ... 32 0.50
U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in bl... 31 0.66
U56963-2|AAB38119.2| 326|Caenorhabditis elegans Neuropeptide-li... 29 3.5
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 29 3.5
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 29 3.5
U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily ass... 29 4.7
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +2
Query: 257 GHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAV 436
GH + + + + R + G S + + + GHS+V H+A+ +S R
Sbjct: 1232 GHKDIVELLLKEGANIEHRDKKGFSPLIIAATAGHSSVVEVLLKNHAAIEAQSDRTKDTA 1291
Query: 437 TARSQSGGRR 466
+ + SGGR+
Sbjct: 1292 LSLACSGGRK 1301
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +2
Query: 257 GHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAV 436
GH + + + + R + G S + + + GHS+V H+A+ +S R
Sbjct: 1232 GHKDIVELLLKEGANIEHRDKKGFSPLIIAATAGHSSVVEVLLKNHAAIEAQSDRTKDTA 1291
Query: 437 TARSQSGGRR 466
+ + SGGR+
Sbjct: 1292 LSLACSGGRK 1301
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
protein R11A8.7d protein.
Length = 1427
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +2
Query: 257 GHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAV 436
GH + + + + R + G S + + + GHS+V H+A+ +S R
Sbjct: 53 GHKDIVELLLKEGANIEHRDKKGFSPLIIAATAGHSSVVEVLLKNHAAIEAQSDRTKDTA 112
Query: 437 TARSQSGGRR 466
+ + SGGR+
Sbjct: 113 LSLACSGGRK 122
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
protein R11A8.7c protein.
Length = 1405
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +2
Query: 257 GHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAV 436
GH + + + + R + G S + + + GHS+V H+A+ +S R
Sbjct: 53 GHKDIVELLLKEGANIEHRDKKGFSPLIIAATAGHSSVVEVLLKNHAAIEAQSDRTKDTA 112
Query: 437 TARSQSGGRR 466
+ + SGGR+
Sbjct: 113 LSLACSGGRK 122
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +2
Query: 257 GHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAV 436
GH + + + + R + G S + + + GHS+V H+A+ +S R
Sbjct: 1232 GHKDIVELLLKEGANIEHRDKKGFSPLIIAATAGHSSVVEVLLKNHAAIEAQSDRTKDTA 1291
Query: 437 TARSQSGGRR 466
+ + SGGR+
Sbjct: 1292 LSLACSGGRK 1301
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +2
Query: 257 GHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAV 436
GH + + + + R + G S + + + GHS+V H+A+ +S R
Sbjct: 1232 GHKDIVELLLKEGANIEHRDKKGFSPLIIAATAGHSSVVEVLLKNHAAIEAQSDRTKDTA 1291
Query: 437 TARSQSGGRR 466
+ + SGGR+
Sbjct: 1292 LSLACSGGRK 1301
>AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical
protein Y71A12B.4 protein.
Length = 1913
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/84 (22%), Positives = 40/84 (47%)
Frame = +3
Query: 198 RNAQCGHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQR 377
+ ++ G S + RGHS V H+ + V + G +A+ + GH ++ +
Sbjct: 835 KQSKNGWSPLLEACARGHSGVANILLKHHARIDVFDEMGRTALHLAAFNGHLSLVHLLLQ 894
Query: 378 GHSAVTARSQCGHSAVTVRSQRGH 449
+ V ++S+ G + + + +Q GH
Sbjct: 895 HKAFVNSKSKTGEAPLHLAAQHGH 918
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +2
Query: 221 RGHSAVTARSQCGHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAVTARSQCGHSA 400
RGHS V H+ + V + G +A+ + GH ++ + + V ++S+ G +
Sbjct: 850 RGHSGVANILLKHHARIDVFDEMGRTALHLAAFNGHLSLVHLLLQHKAFVNSKSKTGEAP 909
Query: 401 VTVRSQRGHSAV 436
+ + +Q GH V
Sbjct: 910 LHLAAQHGHVKV 921
>U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 10 protein.
Length = 375
Score = 31.5 bits (68), Expect = 0.66
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 1/98 (1%)
Frame = -3
Query: 504 CGTCAEP-CATSPLRRPPLCDRAVTAL*PRCDRTVTAL*PHCDRAVTAL*PRCDRTVTAL 328
C A+P C +P+++ P CD A P C + P CD A P CD
Sbjct: 182 CCQQAQPACDCAPVQQQPSCDCAPVQQNPCCQQAQ----PACDCAPVQQQPACDCAPVQQ 237
Query: 327 *PHCDRAVTAL*PRCDRTVTAL*PHCDRAVTAL*PRCD 214
P C + + CD P C +A P CD
Sbjct: 238 NPCCQQQAQS---TCDCAPVQQNPCCQQAQ----PACD 268
Score = 31.1 bits (67), Expect = 0.87
Identities = 29/93 (31%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Frame = -3
Query: 489 EPCATSPLRRPPLCDRAVTAL*PRCDRTVTAL*PHCDRAVTAL*P-RCDRTVTAL*PHCD 313
+PCA P ++ P C+ A P C P C+ A P C + P CD
Sbjct: 61 DPCACQPQQQQPACNCAPVQQDP-CACQPQQQQPACNCAPVQQDPCACQQQQ----PSCD 115
Query: 312 RAVTAL*PRCDRTVTAL*PHCDRAVTAL*PRCD 214
A P CD P CD A A P CD
Sbjct: 116 CAPVQQQPACDCQPQQQ-PACDCAPVAQQPACD 147
>U56963-2|AAB38119.2| 326|Caenorhabditis elegans Neuropeptide-like
protein protein16 protein.
Length = 326
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/87 (22%), Positives = 30/87 (34%)
Frame = +2
Query: 239 TARSQCGHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQRGHSAVTARSQCGHSAVTVRSQ 418
TA+ H V H S GH V GH ++ S GH +V
Sbjct: 107 TAKRSTEHHRVKRSEGHPHEKKATHSPEGH-IVAKDDHHGHEKRSSDSHHGHQKRSVDEH 165
Query: 419 RGHSAVTARSQSGGRRRGDVAQGSAQV 499
GH A ++R + + A++
Sbjct: 166 HGHQKKNAEDHHEHQKRSEHVEHQAEM 192
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -3
Query: 225 PRCDRTERFVRS-FTHLSILKNDFAKQTRQQIKLKLIMKKGVLFYYILST*ENYKFITW 52
P RT +F + F L+ D ++TR +I K G+LFY+ + + + FI +
Sbjct: 1124 PEISRTLKFKENGFVQFENLQIDVRERTRVEIVFKPYRTNGILFYWSVPSDPHTDFIAF 1182
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -3
Query: 225 PRCDRTERFVRS-FTHLSILKNDFAKQTRQQIKLKLIMKKGVLFYYILST*ENYKFITW 52
P RT +F + F L+ D ++TR +I K G+LFY+ + + + FI +
Sbjct: 1076 PEISRTLKFKENGFVQFENLQIDVRERTRVEIVFKPYRTNGILFYWSVPSDPHTDFIAF 1134
>U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform b protein.
Length = 868
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 410 RSQRGHSAVTARSQSGGRRRGDVAQGSAQVPQS 508
R QRG+ V ++ GG+R DV ++ VP S
Sbjct: 25 RDQRGYVHVEITTRRGGQRAADVEMMTSSVPSS 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,410,971
Number of Sequences: 27780
Number of extensions: 220949
Number of successful extensions: 929
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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