Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12c01f
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    27   2.7  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    27   2.7  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   4.8  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.8  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    25   8.4  

>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +1

Query: 202 KREAK-QEAARAMLLCLSTIGHRVPPPFATEFTQPSHSNQSAGECSEGKAPTVDSRSYVA 378
           K+E+K Q    +  + LST   +   P  T     + S+    EC   K P   S + ++
Sbjct: 613 KQESKPQLTGNSRQIDLSTFVKQANTPNITSLLDGTCSSPPNNECFNDKEPDSSSSTLIS 672

Query: 379 LLKELCEEYKLPGVE 423
             +EL  EY+ P  E
Sbjct: 673 DRQEL--EYRNPNAE 685


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 22/95 (23%), Positives = 39/95 (41%)
 Frame = +1

Query: 103 EYECVAQSGPQHQATFEFRCKALGESVSASARSKREAKQEAARAMLLCLSTIGHRVPPPF 282
           +YE + +  P  Q T  F    +G+ V    R+K+    + ++A  +  + +G   P P 
Sbjct: 113 KYELIKK--PDGQFTL-FTVNTVGKEVQRKLRTKQ---LDLSKAESIISAVLGEEKPDPS 166

Query: 283 ATEFTQPSHSNQSAGECSEGKAPTVDSRSYVALLK 387
           +     P  +  +    SEGK     S     +LK
Sbjct: 167 SKVSNIPEENRDATSAISEGKETESVSLEETGVLK 201


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -2

Query: 285 SKWWGYTVTYCRKTQQHGTGCFL 217
           ++++ ++ +Y +K + HGTGC L
Sbjct: 242 NRFYHFSSSYLKKGEVHGTGCTL 264


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 313 NQSAGECSEGKAPTVDSRSYVALLKELCEEYKLPGV 420
           + S G       P+  +  Y ++LKELC  Y LP +
Sbjct: 85  SSSLGSHDSSSLPSSTNNRYSSVLKELCNTY-LPSI 119


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 191 EAETDSPKALQRNSNVAWCWGPD*ATHSYSGICPSFIIISCST 63
           EA+      LQ NSN +       +  S+SGI P+ I  SCS+
Sbjct: 411 EADKKPHSLLQSNSNASH------SAFSFSGISPAIISPSCSS 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,608
Number of Sequences: 5004
Number of extensions: 36345
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)