Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12c01f
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U67949-5|AAB07566.1| 705|Caenorhabditis elegans Hypothetical pr... 38 0.004
L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related p... 29 2.5
Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z48009-7|CAA88083.1| 329|Caenorhabditis elegans Hypothetical pr... 29 3.3
U80024-7|AAW88409.1| 295|Caenorhabditis elegans Serpentine rece... 29 3.3
AF016441-8|AAB65913.2| 212|Caenorhabditis elegans Hypothetical ... 28 4.4
Z83233-10|CAB05768.2| 364|Caenorhabditis elegans Hypothetical p... 28 5.8
AL110490-8|CAB54444.2| 602|Caenorhabditis elegans Hypothetical ... 28 5.8
AF273799-1|AAG15148.1| 365|Caenorhabditis elegans nuclear recep... 28 5.8
AF273798-1|AAG15147.1| 366|Caenorhabditis elegans nuclear recep... 28 5.8
AF025379-1|AAC14017.1| 602|Caenorhabditis elegans acetylcholine... 28 5.8
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ... 27 7.7
>U67949-5|AAB07566.1| 705|Caenorhabditis elegans Hypothetical
protein F55A4.5 protein.
Length = 705
Score = 38.3 bits (85), Expect = 0.004
Identities = 44/185 (23%), Positives = 77/185 (41%), Gaps = 16/185 (8%)
Frame = +1
Query: 40 NKMKTPITVLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKAL--GESVSASARSKREA 213
+K K+ I+ + E +L +E + + GP H + RC + G V A A K +
Sbjct: 288 HKQKSVISDIHEKAYQLKVNVVFEVLKEEGPPHDRQYVVRCAFVTSGNVVKAEAVGKGKK 347
Query: 214 KQEAAR-AMLLCLSTIGHRVPP--PFATEFTQPSHSNQSAGECSEGKAPTV--DSR---- 366
K+ A + A L+T+ H P P A + A E K T+ D +
Sbjct: 348 KKSAQQEACTQLLATVEHLTPENNPVALATNVCKTQKKLAAMNREPKRKTIVKDKKMDPL 407
Query: 367 -----SYVALLKELCEEYKLPGVEYALVADTGPAHMRLFSVRASIGLHSRDASGTTKRQA 531
+ V+ L ++ + + LVA+ G + + F ++ G ++ G KR A
Sbjct: 408 YGHQINPVSRLIQVTQAKSKEHPTFELVAEHGVSKYKEFIIQVKYGDDVQEGKGPNKRLA 467
Query: 532 RQKAA 546
++ AA
Sbjct: 468 KRAAA 472
Score = 32.3 bits (70), Expect = 0.27
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Frame = +1
Query: 64 VLQEMMMKLGQIPEYECVAQSGPQHQATFEFRCKALGESVSASARSKREAKQEAARAMLL 243
++Q K + P +E VA+ G F + K + +KR AK+ AA AML
Sbjct: 418 LIQVTQAKSKEHPTFELVAEHGVSKYKEFIIQVKYGDDVQEGKGPNKRLAKRAAAEAMLE 477
Query: 244 CLSTIGHRVPPPFATEFTQPSHSNQSAGECSE--GKAPTVDSRS 369
+ + +PPP + + + S E S G PT S S
Sbjct: 478 SIGFV-KPLPPPGKSLLKKMIDCDPSLPEISHWTGPPPTAVSVS 520
Score = 31.9 bits (69), Expect = 0.36
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +1
Query: 364 RSYVALLKELCEEYKLPGVEYALVADTGPAHMRLFSVRASI-GLHSRDASGTTKRQARQK 540
+S + + E+ KL V Y L ++GPAH +LF+V+ + + + SGT+ ++A+Q
Sbjct: 77 KSAMCRVAEIARFNKLRHV-YNLQDESGPAHKKLFTVKLVLTEAETFEGSGTSIKRAQQA 135
Query: 541 AA 546
+A
Sbjct: 136 SA 137
>L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related
protein 1 protein.
Length = 1845
Score = 29.1 bits (62), Expect = 2.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 90 KFHHHFLQYCYGSFHLVVRFLKL 22
+F HF+ C G +H++ +F+KL
Sbjct: 1665 EFQKHFIAMCPGLYHMIEKFVKL 1687
>Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical
protein T12A7.5 protein.
Length = 1076
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 274 GVHGDLL*KDTTAWHGLLPALLPSLIVQKQRQTHL 170
G+H DLL ++ G+LP L P+ I +KQ + L
Sbjct: 883 GIHSDLLLREAQM-SGVLPCLAPTAIPEKQNCSQL 916
>Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical
protein T12A7.5 protein.
Length = 1076
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 274 GVHGDLL*KDTTAWHGLLPALLPSLIVQKQRQTHL 170
G+H DLL ++ G+LP L P+ I +KQ + L
Sbjct: 883 GIHSDLLLREAQM-SGVLPCLAPTAIPEKQNCSQL 916
>Z48009-7|CAA88083.1| 329|Caenorhabditis elegans Hypothetical
protein AH6.10 protein.
Length = 329
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 107 YSGICPSFIIISCSTVMGVFILLLD 33
Y G+C S I++ CST G FI+L D
Sbjct: 142 YIGVCISLIVLVCSTSSG-FIILWD 165
>U80024-7|AAW88409.1| 295|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 7 protein.
Length = 295
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 113 HSYSGICPSFIIISCSTVMGVF 48
H+Y +CPS +I+ S MG+F
Sbjct: 123 HNYRDLCPSILILLFSVFMGMF 144
>AF016441-8|AAB65913.2| 212|Caenorhabditis elegans Hypothetical
protein M03F8.6 protein.
Length = 212
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 84 ETWTDSRV*MCCSVRAPTPGHI 149
+TW D R+ SVR P P HI
Sbjct: 74 QTWRDERLRFVGSVRVPVPSHI 95
>Z83233-10|CAB05768.2| 364|Caenorhabditis elegans Hypothetical
protein K06B4.11 protein.
Length = 364
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 180 CLCFCTIKEGSKAGSSPCHAVVSFYNRS 263
CL C + +G G++ C A +F+ R+
Sbjct: 23 CLICCEVADGHHFGAAACRACAAFFRRT 50
>AL110490-8|CAB54444.2| 602|Caenorhabditis elegans Hypothetical
protein Y48B6A.7 protein.
Length = 602
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/67 (20%), Positives = 29/67 (43%)
Frame = -1
Query: 250 KDTTAWHGLLPALLPSLIVQKQRQTHLKPYSGTQMWPGVGALTEQHIHTLESVQVSSSFL 71
++ W GL A P+ + R + + G++MW ++E ++ + L
Sbjct: 70 REKKQWRGLYDATKPANACFQTRDNYNTSFWGSEMWNANTQISEDCLYLNIWAPADAYNL 129
Query: 70 AVLLWEF 50
V++W F
Sbjct: 130 TVMVWFF 136
>AF273799-1|AAG15148.1| 365|Caenorhabditis elegans nuclear receptor
NHR-53 protein.
Length = 365
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 180 CLCFCTIKEGSKAGSSPCHAVVSFYNRS 263
CL C + +G G++ C A +F+ R+
Sbjct: 24 CLICCEVADGHHFGAAACRACAAFFRRT 51
>AF273798-1|AAG15147.1| 366|Caenorhabditis elegans nuclear receptor
NHR-53 protein.
Length = 366
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 180 CLCFCTIKEGSKAGSSPCHAVVSFYNRS 263
CL C + +G G++ C A +F+ R+
Sbjct: 25 CLICCEVADGHHFGAAACRACAAFFRRT 52
>AF025379-1|AAC14017.1| 602|Caenorhabditis elegans
acetylcholinesterase protein.
Length = 602
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/67 (20%), Positives = 29/67 (43%)
Frame = -1
Query: 250 KDTTAWHGLLPALLPSLIVQKQRQTHLKPYSGTQMWPGVGALTEQHIHTLESVQVSSSFL 71
++ W GL A P+ + R + + G++MW ++E ++ + L
Sbjct: 70 REKKQWRGLYDATKPANACFQTRDNYNTSFWGSEMWNANTQISEDCLYLNIWAPADAYNL 129
Query: 70 AVLLWEF 50
V++W F
Sbjct: 130 TVMVWFF 136
>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
protein Y38C9A.1 protein.
Length = 1484
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 211 AKQEAARAMLLCLSTIGHRVPPPFATEFTQPSHSNQSA 324
AK+ A A LS +GH+ P P A + T P + +A
Sbjct: 1128 AKKPAPSASAHNLSALGHQKPGPTAPKVTAPKPTTSTA 1165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,128,304
Number of Sequences: 27780
Number of extensions: 220572
Number of successful extensions: 719
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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