Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b24r
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   149   2e-36
U21320-7|AAA62533.1|  558|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.    28   5.8  
Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical p...    28   5.8  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical ...    28   5.8  
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    28   7.6  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  149 bits (361), Expect = 2e-36
 Identities = 69/157 (43%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
 Frame = -3

Query: 713 RAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRF 534
           RAGKGK+RNR+  Q+ GP++I+ +D    RAFRNIPGV+           LAPGGHLGR 
Sbjct: 189 RAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGHLGRL 248

Query: 533 VIWTQSAFGRLDPLFGSWKTPSKQ-KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKR 357
           +IWT+SAF +LD ++G+    S Q KK +++P P MAN+D +R+++S+E+ K +RAP K 
Sbjct: 249 IIWTESAFKKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKN 308

Query: 356 VIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRR 246
            +      NPL     + KLNPYA++L++ +   +++
Sbjct: 309 PVLPKVHRNPLKKRTLLYKLNPYASILRKASKANVKK 345


>U21320-7|AAA62533.1|  558|Caenorhabditis elegans Hypothetical
           protein K04G7.1 protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -3

Query: 323 TNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 144
           T++ +  K+N       +K  LE+R  +  + + D E SG +LS   P   A  L++RRR
Sbjct: 353 TSSASPQKMNHEQQRYSQKRHLEMRTGRTTRDMRDYESSGRQLSP-TPTTTAGLLKKRRR 411

Query: 143 K 141
           +
Sbjct: 412 E 412


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
 Frame = -3

Query: 467 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 288
           K+ +NFN+ Q      D+TR +K     K +R   +  I   R   P T N+    L+ +
Sbjct: 138 KRARNFNIGQDIQPKKDVTRFVKWP---KYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194

Query: 287 AAVLKRKAILELR------RRKNLKALADAEKSGLK 198
           +A    K + + R      ++  L+A A+A  +G K
Sbjct: 195 SARQAFKLLDKYRPESSEAKKNRLRARAEARAAGKK 230


>AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical
           protein T28C12.3 protein.
          Length = 430

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +3

Query: 558 SQLQEVQLVNIQELHTG--DVAESASQTLILVEDYEGSLTLDTTTVAHFTL 704
           S L+  +   ++ LH    +  E + + L++++ +E + TL  TTVA+F+L
Sbjct: 281 SLLKHFEPETLESLHIEILEFDEDSVKELVILDQWEEAKTLSLTTVAYFSL 331


>Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -3

Query: 422 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 267
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


>Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -3

Query: 422 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 267
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -3

Query: 542  GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 363
            G F+  T    G     F   +TP   +  +N   P+ A      +++  +IR +L  P 
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848

Query: 362  KRVI 351
            K  +
Sbjct: 2849 KEFV 2852


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -3

Query: 542  GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 363
            G F+  T    G     F   +TP   +  +N   P+ A      +++  +IR +L  P 
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848

Query: 362  KRVI 351
            K  +
Sbjct: 2849 KEFV 2852


>AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -3

Query: 422 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 267
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
 Frame = -3

Query: 467 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 288
           K+ +NFN+ Q      D+TR +K     K +R   +  I   R   P T N+    L+  
Sbjct: 35  KRARNFNIGQDIQPKKDVTRFVKWP---KYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91

Query: 287 AAVLKRKAILELR------RRKNLKALADAEKSGLK 198
           +A    K + + R      ++  L+A A+A  +G K
Sbjct: 92  SARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKK 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,030,164
Number of Sequences: 27780
Number of extensions: 248235
Number of successful extensions: 805
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)