Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12b24f
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 173 8e-44
07_01_0578 + 4295386-4296489,4297394-4297507 171 3e-43
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.089
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 33 0.12
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 33 0.16
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 32 0.27
03_05_0366 - 23505755-23506441 31 0.63
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 30 1.5
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 29 1.9
04_01_0588 + 7657510-7657992,7658397-7658843 29 3.4
03_05_0452 + 24464134-24464442 29 3.4
02_04_0457 + 23093020-23093343,23093798-23093806 29 3.4
10_07_0029 + 12031711-12032464,12044289-12044386 28 4.4
07_01_0469 - 3552409-3553368 28 5.9
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068... 28 5.9
05_05_0285 - 23855219-23855371,23855391-23856063,23856239-238563... 28 5.9
04_01_0244 - 3194141-3195091,3195301-3195312 28 5.9
03_01_0147 - 1170481-1171260,1171332-1171511 28 5.9
03_01_0092 - 731069-731434,731569-733080 28 5.9
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 27 7.7
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 27 7.7
11_01_0411 - 3114959-3115000,3115504-3116703 27 7.7
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 27 7.7
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 27 7.7
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 27 7.7
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 173 bits (421), Expect = 8e-44
Identities = 86/150 (57%), Positives = 96/150 (64%), Gaps = 1/150 (0%)
Frame = +2
Query: 113 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 289
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 290 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 469
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRL 122
Query: 470 XXXXXXXXXXXXXXXXXXQARGHIIEKIPE 559
ARGH IE +PE
Sbjct: 123 RRIAVASALAATAVPSLVLARGHRIEGVPE 152
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 171 bits (416), Expect = 3e-43
Identities = 84/148 (56%), Positives = 98/148 (66%), Gaps = 2/148 (1%)
Frame = +2
Query: 122 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 295
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 296 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 475
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRR 125
Query: 476 XXXXXXXXXXXXXXXXQARGHIIEKIPE 559
ARGH IE +PE
Sbjct: 126 VAVASALAATSVPSLVLARGHRIETVPE 153
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.089
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 302 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 412
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 33.5 bits (73), Expect = 0.12
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3
Query: 408 PPRHMLPKAP*PDLWVPPP 352
PPRH++P+ P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 33.1 bits (72), Expect = 0.16
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +1
Query: 85 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 240
ASL N + P+F V G SQA V + GAHT G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 32.3 bits (70), Expect = 0.27
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 85 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 240
ASL N I +PTF +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 0.63
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 188 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 364
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 365 HRSGQGA 385
+ + + A
Sbjct: 168 NDNDEEA 174
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 85 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 240
ASL N I +PT +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 85 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 240
ASL+ N ++ +PT V ++ G S V + GAHT G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +2
Query: 224 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 394
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 395 MCRGGRMFAPTKPWRRW 445
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>03_05_0452 + 24464134-24464442
Length = 102
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 244 VQELEAALLREQGGWSPNQCRIMGYRTCCCPNSA 345
V+++ ++LLR G Q ++G R C C NSA
Sbjct: 21 VEKVRSSLLRVLGLLRGGQASMLGKRACFCSNSA 54
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 287 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 391
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>10_07_0029 + 12031711-12032464,12044289-12044386
Length = 283
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 413 YVHHDTCYRRHPDRTYG 363
Y+ HDT YR HP R G
Sbjct: 94 YIFHDTAYRYHPRRANG 110
>07_01_0469 - 3552409-3553368
Length = 319
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 413 YVHHDTCYRRHPDRTYG 363
Y+ HDT YR HP R G
Sbjct: 94 YIFHDTAYRFHPRRASG 110
>06_03_1205 -
28406183-28406218,28406462-28406548,28406769-28406830,
28407968-28408184,28408793-28408957,28409145-28409250,
28409830-28410071,28410493-28410605,28410848-28411043,
28411681-28411827,28412034-28412218,28412478-28412592,
28413237-28413728
Length = 720
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 389 RRHPDRTYGYHHHGHAEFGQQHVRYPMI 306
R H D +G+HHH H G H P +
Sbjct: 68 RAHGDHHHGHHHHHHGH-GHSHHHGPEV 94
>05_05_0285 -
23855219-23855371,23855391-23856063,23856239-23856301,
23856478-23856604,23856751-23856897,23856968-23856974,
23857203-23857379
Length = 448
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 433 LAALAPSRQPPTAESGLGSSRCCYWRPSARS 525
+A AP AESG+G+ C +WR S S
Sbjct: 306 IAKDAPPAVEVKAESGVGTLGCAFWRTSLGS 336
>04_01_0244 - 3194141-3195091,3195301-3195312
Length = 320
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 413 YVHHDTCYRRHPDRTYG 363
Y+ HDT YR HP R G
Sbjct: 98 YIFHDTAYRFHPRRANG 114
>03_01_0147 - 1170481-1171260,1171332-1171511
Length = 319
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 79 GIASLK*R-NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 240
G ASL+ ++I +PTF++ + G +Q V + GAHT G C+ F
Sbjct: 139 GTASLEPEVADNIPAPTFTLDQLTQSFAAKGLTQEEMVTLSGAHTVGRAH-CTSF 192
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -3
Query: 405 PRHMLPKAP*PDLWVPPPRTRGIRATARPVP 313
P H++P P P L P P+++ R P
Sbjct: 267 PHHIMPMTPQPQLQPPQPQSKEANTVVRAAP 297
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 197 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 310
K ++ D N++ + SK R VSK H SAES
Sbjct: 80 KRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAES 117
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 27.5 bits (58), Expect = 7.7
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 191 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRA---VARIPRVRGGG 361
VF PIR D+V+ V +K + ++ +Q GTGRA R P+ RGG
Sbjct: 160 VFDVPIRKDIVHRVGTHSTKTISEVSGTGRKPYNQK-----GTGRARHGTLRGPQFRGGA 214
Query: 362 T 364
T
Sbjct: 215 T 215
>11_01_0411 - 3114959-3115000,3115504-3116703
Length = 413
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 393 LPKAP*PDLWVPPPRTRGIRATARPVPHDSALV-W*PASL 277
+P P P LW+P P A P+ H S+L W P +L
Sbjct: 276 VPCPPAPPLWLPSPSVPSSLALHVPLFHASSLERWSPTAL 315
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +2
Query: 281 EAGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGRMFAPTKP-WR 439
E G ++ G++V + + R+R H G G+ G++ + GG+M P P WR
Sbjct: 74 EGGGSDKSKGSEVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGKMLRPGFPKWR 132
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 194 IRTGGAWLHPAPSHSSLN-TPTLKVGLPIDSF 102
+R+ WL P P+H ++N L + +P+D F
Sbjct: 865 LRSYITWLKPTPAHVAMNPAEALAMQIPVDHF 896
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/34 (29%), Positives = 14/34 (41%)
Frame = -1
Query: 380 PDRTYGYHHHGHAEFGQQHVRYPMIRHWFGDQPP 279
P + +HHHGH + + H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,883,998
Number of Sequences: 37544
Number of extensions: 391181
Number of successful extensions: 1637
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1629
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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