Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b24f
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   168   3e-42
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   0.57 
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    27   7.0  
U42439-8|AAM98032.1|  431|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AC024813-3|AAK27881.1|  461|Caenorhabditis elegans Est (ever sho...    27   7.0  
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho...    27   7.0  
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho...    27   7.0  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    27   9.2  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  168 bits (408), Expect = 3e-42
 Identities = 82/147 (55%), Positives = 97/147 (65%)
 Frame = +2

Query: 119 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 298
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 299 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXX 478
           SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH          
Sbjct: 62  SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRY 121

Query: 479 XXXXXXXXXXXXXXXQARGHIIEKIPE 559
                          QARGH+I+++ E
Sbjct: 122 AVSSAIAASGIPALLQARGHVIDQVAE 148


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +2

Query: 251 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 421
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 422 PTKP 433
             KP
Sbjct: 197 APKP 200


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 167 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 66
           P  S +S N PT+K+ L I+   YF     PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +1

Query: 289 SPNQC--RIMGYRTCCCPNSAC 348
           S N+C  +  G+ TCCC + AC
Sbjct: 866 STNRCHQQEQGFETCCCDSDAC 887


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +1

Query: 289 SPNQC--RIMGYRTCCCPNSAC 348
           S N+C  +  G+ TCCC + AC
Sbjct: 866 STNRCHQQEQGFETCCCDSDAC 887


>U42439-8|AAM98032.1|  431|Caenorhabditis elegans Hypothetical
           protein F19C7.8a protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 371 TYGYHHHGHAEFGQQHVRYPMIRHWFGDQPP 279
           T+GYHH+ HA   Q  +   + R      PP
Sbjct: 67  THGYHHNPHARLSQPDIHSAIYRPHHYYSPP 97


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 407 HHDTCYRRHPDRTYGYHHHGHAEFGQQH 324
           HHD  +++H  + +  HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>AC024813-3|AAK27881.1|  461|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform b protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = +2

Query: 122 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 295
           RP + +Y        G+ K L    +   P RP+ +N    +MS NSR+    +     +
Sbjct: 19  RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78

Query: 296 TSAESWGTGRAVARIPRVRGGGTHRSGQG 382
             + S      V      RGGG +R  +G
Sbjct: 79  GGSGSTTPDANVINAMNERGGGRNRFEKG 107


>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform c protein.
          Length = 1027

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = +2

Query: 122 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 295
           RP + +Y        G+ K L    +   P RP+ +N    +MS NSR+    +     +
Sbjct: 19  RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78

Query: 296 TSAESWGTGRAVARIPRVRGGGTHRSGQG 382
             + S      V      RGGG +R  +G
Sbjct: 79  GGSGSTTPDANVINAMNERGGGRNRFEKG 107


>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform a protein.
          Length = 1241

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = +2

Query: 122 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 295
           RP + +Y        G+ K L    +   P RP+ +N    +MS NSR+    +     +
Sbjct: 19  RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78

Query: 296 TSAESWGTGRAVARIPRVRGGGTHRSGQG 382
             + S      V      RGGG +R  +G
Sbjct: 79  GGSGSTTPDANVINAMNERGGGRNRFEKG 107


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 544 NNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAP 437
           N VS+ + + ++AS+S G   G S  +E+D   P P
Sbjct: 625 NGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 408 PPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 310
           PP    P AP P +++PPP   G     R P+ H
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 408 PPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 310
           PP    P AP P +++PPP   G     R P+ H
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = +2

Query: 104 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 277
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,807,792
Number of Sequences: 27780
Number of extensions: 271146
Number of successful extensions: 939
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)