Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b22r
         (728 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L06419-1|AAA60116.1|  727|Homo sapiens lysyl hydroxylase protein.      60   1e-08
BC016657-1|AAH16657.1|  727|Homo sapiens procollagen-lysine 1, 2...    60   1e-08
AL096840-6|CAC19722.1|  727|Homo sapiens procollagen-lysine 1, 2...    60   1e-08
AF490527-1|AAM12752.1|  727|Homo sapiens lysyl hydroxylase protein.    60   1e-08
BC011674-1|AAH11674.1|  738|Homo sapiens procollagen-lysine, 2-o...    59   2e-08
AY220458-1|AAO61775.1|  738|Homo sapiens lysyl hydroxylase 3 pro...    59   2e-08
AF207069-1|AAF63701.1|  738|Homo sapiens lysyl hydroxylase 3 pro...    59   2e-08
AF068229-1|AAC34808.1|  738|Homo sapiens lysyl hydroxylase 3 pro...    59   2e-08
AF046889-1|AAC39753.1|  738|Homo sapiens lysyl hydroxylase isofo...    59   2e-08
AC004876-5|AAD45831.1|  738|Homo sapiens lysyl hydroxylase 3 pro...    59   2e-08
U84573-1|AAB58363.1|  737|Homo sapiens lysyl hydroxylase isoform...    54   4e-07
BC037169-1|AAH37169.1|  758|Homo sapiens procollagen-lysine, 2-o...    54   4e-07
BC016834-1|AAH16834.1|  210|Homo sapiens PLOD2 protein protein.        54   4e-07
AB209879-1|BAD93116.1|  796|Homo sapiens procollagen-lysine, 2-o...    54   4e-07
AF057694-1|AAC13540.1| 1199|Homo sapiens TBP-associated factor T...    31   4.2  
AF040701-1|AAC68502.1| 1189|Homo sapiens TATA binding protein as...    31   4.2  
AF026445-1|AAC02966.1| 1199|Homo sapiens cofactor of initiator f...    31   4.2  

>L06419-1|AAA60116.1|  727|Homo sapiens lysyl hydroxylase protein.
          Length = 727

 Score = 59.7 bits (138), Expect = 1e-08
 Identities = 24/29 (82%), Positives = 26/29 (89%)
 Frame = -3

Query: 726 MHPGRLTHYHEGLLVTKGTRYIMISFVDP 640
           MHPGRLTHYHEGL  T+GTRYI +SFVDP
Sbjct: 699 MHPGRLTHYHEGLPTTRGTRYIAVSFVDP 727


>BC016657-1|AAH16657.1|  727|Homo sapiens procollagen-lysine 1,
           2-oxoglutarate 5-dioxygenase 1 protein.
          Length = 727

 Score = 59.7 bits (138), Expect = 1e-08
 Identities = 24/29 (82%), Positives = 26/29 (89%)
 Frame = -3

Query: 726 MHPGRLTHYHEGLLVTKGTRYIMISFVDP 640
           MHPGRLTHYHEGL  T+GTRYI +SFVDP
Sbjct: 699 MHPGRLTHYHEGLPTTRGTRYIAVSFVDP 727


>AL096840-6|CAC19722.1|  727|Homo sapiens procollagen-lysine 1,
           2-oxoglutarate 5-dioxygenase 1 protein.
          Length = 727

 Score = 59.7 bits (138), Expect = 1e-08
 Identities = 24/29 (82%), Positives = 26/29 (89%)
 Frame = -3

Query: 726 MHPGRLTHYHEGLLVTKGTRYIMISFVDP 640
           MHPGRLTHYHEGL  T+GTRYI +SFVDP
Sbjct: 699 MHPGRLTHYHEGLPTTRGTRYIAVSFVDP 727


>AF490527-1|AAM12752.1|  727|Homo sapiens lysyl hydroxylase protein.
          Length = 727

 Score = 59.7 bits (138), Expect = 1e-08
 Identities = 24/29 (82%), Positives = 26/29 (89%)
 Frame = -3

Query: 726 MHPGRLTHYHEGLLVTKGTRYIMISFVDP 640
           MHPGRLTHYHEGL  T+GTRYI +SFVDP
Sbjct: 699 MHPGRLTHYHEGLPTTRGTRYIAVSFVDP 727


>BC011674-1|AAH11674.1|  738|Homo sapiens procollagen-lysine,
           2-oxoglutarate 5-dioxygenase 3 protein.
          Length = 738

 Score = 58.8 bits (136), Expect = 2e-08
 Identities = 24/29 (82%), Positives = 26/29 (89%)
 Frame = -3

Query: 726 MHPGRLTHYHEGLLVTKGTRYIMISFVDP 640
           +HPGRLTHYHEGL  T GTRYIM+SFVDP
Sbjct: 710 LHPGRLTHYHEGLPTTWGTRYIMVSFVDP 738


>AY220458-1|AAO61775.1|  738|Homo sapiens lysyl hydroxylase 3
           protein.
          Length = 738

 Score = 58.8 bits (136), Expect = 2e-08
 Identities = 24/29 (82%), Positives = 26/29 (89%)
 Frame = -3

Query: 726 MHPGRLTHYHEGLLVTKGTRYIMISFVDP 640
           +HPGRLTHYHEGL  T GTRYIM+SFVDP
Sbjct: 710 LHPGRLTHYHEGLPTTWGTRYIMVSFVDP 738


>AF207069-1|AAF63701.1|  738|Homo sapiens lysyl hydroxylase 3
           protein.
          Length = 738

 Score = 58.8 bits (136), Expect = 2e-08
 Identities = 24/29 (82%), Positives = 26/29 (89%)
 Frame = -3

Query: 726 MHPGRLTHYHEGLLVTKGTRYIMISFVDP 640
           +HPGRLTHYHEGL  T GTRYIM+SFVDP
Sbjct: 710 LHPGRLTHYHEGLPTTWGTRYIMVSFVDP 738


>AF068229-1|AAC34808.1|  738|Homo sapiens lysyl hydroxylase 3
           protein.
          Length = 738

 Score = 58.8 bits (136), Expect = 2e-08
 Identities = 24/29 (82%), Positives = 26/29 (89%)
 Frame = -3

Query: 726 MHPGRLTHYHEGLLVTKGTRYIMISFVDP 640
           +HPGRLTHYHEGL  T GTRYIM+SFVDP
Sbjct: 710 LHPGRLTHYHEGLPTTWGTRYIMVSFVDP 738


>AF046889-1|AAC39753.1|  738|Homo sapiens lysyl hydroxylase isoform
           3 protein.
          Length = 738

 Score = 58.8 bits (136), Expect = 2e-08
 Identities = 24/29 (82%), Positives = 26/29 (89%)
 Frame = -3

Query: 726 MHPGRLTHYHEGLLVTKGTRYIMISFVDP 640
           +HPGRLTHYHEGL  T GTRYIM+SFVDP
Sbjct: 710 LHPGRLTHYHEGLPTTWGTRYIMVSFVDP 738


>AC004876-5|AAD45831.1|  738|Homo sapiens lysyl hydroxylase 3
           protein.
          Length = 738

 Score = 58.8 bits (136), Expect = 2e-08
 Identities = 24/29 (82%), Positives = 26/29 (89%)
 Frame = -3

Query: 726 MHPGRLTHYHEGLLVTKGTRYIMISFVDP 640
           +HPGRLTHYHEGL  T GTRYIM+SFVDP
Sbjct: 710 LHPGRLTHYHEGLPTTWGTRYIMVSFVDP 738


>U84573-1|AAB58363.1|  737|Homo sapiens lysyl hydroxylase isoform 2
           protein.
          Length = 737

 Score = 54.4 bits (125), Expect = 4e-07
 Identities = 22/29 (75%), Positives = 24/29 (82%)
 Frame = -3

Query: 726 MHPGRLTHYHEGLLVTKGTRYIMISFVDP 640
           MHPGRLTH HEGL V  GTRYI +SF+DP
Sbjct: 709 MHPGRLTHLHEGLPVKNGTRYIAVSFIDP 737


>BC037169-1|AAH37169.1|  758|Homo sapiens procollagen-lysine,
           2-oxoglutarate 5-dioxygenase 2 protein.
          Length = 758

 Score = 54.4 bits (125), Expect = 4e-07
 Identities = 22/29 (75%), Positives = 24/29 (82%)
 Frame = -3

Query: 726 MHPGRLTHYHEGLLVTKGTRYIMISFVDP 640
           MHPGRLTH HEGL V  GTRYI +SF+DP
Sbjct: 730 MHPGRLTHLHEGLPVKNGTRYIAVSFIDP 758


>BC016834-1|AAH16834.1|  210|Homo sapiens PLOD2 protein protein.
          Length = 210

 Score = 54.4 bits (125), Expect = 4e-07
 Identities = 22/29 (75%), Positives = 24/29 (82%)
 Frame = -3

Query: 726 MHPGRLTHYHEGLLVTKGTRYIMISFVDP 640
           MHPGRLTH HEGL V  GTRYI +SF+DP
Sbjct: 182 MHPGRLTHLHEGLPVKNGTRYIAVSFIDP 210


>AB209879-1|BAD93116.1|  796|Homo sapiens procollagen-lysine,
           2-oxoglutarate 5-dioxygenase 2 isoform b variant
           protein.
          Length = 796

 Score = 54.4 bits (125), Expect = 4e-07
 Identities = 22/29 (75%), Positives = 24/29 (82%)
 Frame = -3

Query: 726 MHPGRLTHYHEGLLVTKGTRYIMISFVDP 640
           MHPGRLTH HEGL V  GTRYI +SF+DP
Sbjct: 768 MHPGRLTHLHEGLPVKNGTRYIAVSFIDP 796


>AF057694-1|AAC13540.1| 1199|Homo sapiens TBP-associated factor
           TAFII150 protein.
          Length = 1199

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -3

Query: 624 KLSITDKRSDVQLFYRVTLSSSFLFEKVASSIM 526
           +L++TD     Q FYRV +S+ F   K+A+S++
Sbjct: 678 RLALTDILEQEQCFYRVRMSACFCLAKIANSMV 710


>AF040701-1|AAC68502.1| 1189|Homo sapiens TATA binding protein
           associated factor protein.
          Length = 1189

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -3

Query: 624 KLSITDKRSDVQLFYRVTLSSSFLFEKVASSIM 526
           +L++TD     Q FYRV +S+ F   K+A+S++
Sbjct: 668 RLALTDILEQEQCFYRVRMSACFCLAKIANSMV 700


>AF026445-1|AAC02966.1| 1199|Homo sapiens cofactor of initiator
           function protein.
          Length = 1199

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -3

Query: 624 KLSITDKRSDVQLFYRVTLSSSFLFEKVASSIM 526
           +L++TD     Q FYRV +S+ F   K+A+S++
Sbjct: 678 RLALTDILEQEQCFYRVRMSACFCLAKIANSMV 710


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,869,896
Number of Sequences: 237096
Number of extensions: 1472103
Number of successful extensions: 2324
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2324
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)