Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b22f
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.58 
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    28   1.3  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    27   2.3  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   3.1  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    26   4.1  
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    26   5.4  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   7.1  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    25   7.1  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    25   9.4  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   9.4  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -3

Query: 283 PPPGKFMSPPDHSSPLPNTSTS 218
           PPP    S    SSPLP+TSTS
Sbjct: 317 PPPASTSSTGTSSSPLPSTSTS 338



 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 280 PPGKFMSPPDHSSPLPNTSTS 218
           PP    S   +SSPLP TSTS
Sbjct: 208 PPTSTSSTDTNSSPLPTTSTS 228



 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 280 PPGKFMSPPDHSSPLPNTSTS 218
           PP    S   +SSPLP TSTS
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTS 284



 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 280 PPGKFMSPPDHSSPLPNTSTS 218
           PP    S   +S+PLP TSTS
Sbjct: 151 PPTSTSSTDTNSNPLPTTSTS 171



 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 283 PPPGKFMSPPDHSSPLPNTSTS 218
           PPP    S    SSPL +TSTS
Sbjct: 371 PPPASTSSTGTSSSPLLSTSTS 392


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 485 CKFCIRPTKLFSRKKHTCIRKRLEFLYNLI*IPQEHDVITVSEKYYF 345
           C F IRPT    R     + KRL  + N++ +  + D +T+ E+  F
Sbjct: 145 CLFFIRPTGHSLRPIDIAVLKRLTEVVNVVPVIAKSDSLTLEERAAF 191


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 519 YLNSGGFIGYLPEIYEIINSNPIKDKDDDQLY 614
           +L +G F+GY P +   I +N IK KD  + Y
Sbjct: 147 FLETGPFVGYYPSVVSKIRAN-IKLKDVGENY 177


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +3

Query: 288 KVILLKNRLEKLMKADNKEKIILFTDSYDVMFLGNLDEIVKKF--KSF-PDTRVL 443
           +++LL+ R+E   KA     ++ F  SY       LDE  K++  K+F PD R L
Sbjct: 617 QLLLLEKRMESEGKAPTALSLVAFVSSYCKQGAEGLDE-AKRYMSKNFQPDKRAL 670


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 338 VVSFHQLLKPVFQKNYFLSTTGEV 267
           V + H++L P+FQKN+      E+
Sbjct: 285 VQNIHKILLPIFQKNFLTGFPAEI 308


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 267 SCHHLTTLHPCPIPR 223
           +C HL  LHP  IPR
Sbjct: 125 ACQHLAKLHPSEIPR 139


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 108 LFNSHTQATDEVVVLTVATDDNHG 179
           +FN  ++ T  V  +   TD+NHG
Sbjct: 1   MFNDQSKTTSSVKGICATTDNNHG 24


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 20/76 (26%), Positives = 36/76 (47%)
 Frame = +3

Query: 312 LEKLMKADNKEKIILFTDSYDVMFLGNLDEIVKKFKSFPDTRVLFSAEQFCWPDAKLATQ 491
           +EK++ A  K +++ F D  D+    N    V  +KS P+       E F   +A    +
Sbjct: 192 MEKMLNACTKPEMMQFNDGNDIPLRSN---PVSLWKSLPE------GETFTPQEAAKILK 242

Query: 492 YPNIEVVSPYLNSGGF 539
           +P+IE ++   N+  F
Sbjct: 243 WPSIEELNMRQNATHF 258


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 261 HHLTTLHPCPIPRHQYCTLWQNVKTS 184
           H ++ L  CPI  HQ   +W   KTS
Sbjct: 230 HGISKLGLCPICSHQGEFIWLRTKTS 255


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 283 PPPGKFMSPPDHSSPLPNTSTSILYTLAERKNLS 182
           P P    S   HSSP   TS++ LY+L    +LS
Sbjct: 172 PRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLS 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,824
Number of Sequences: 5004
Number of extensions: 58511
Number of successful extensions: 206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)