Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b22f
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398...    31   0.60 
07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026     30   1.4  
01_07_0224 - 42121011-42122486                                         29   3.2  
04_04_1372 + 33008740-33009130,33009485-33011544                       28   7.4  
03_05_0331 - 23233883-23233972,23234099-23234164,23234300-232343...    28   7.4  
03_02_0077 - 5463347-5463445,5463557-5463622,5463736-5463801,546...    28   7.4  
11_06_0162 + 20818335-20818943                                         27   9.7  
02_05_1131 - 34328168-34328557,34328838-34328957,34329067-343291...    27   9.7  

>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
            3983250-3983301,3983497-3983654,3983756-3985617,
            3986029-3986093,3986176-3986340,3986836-3986893,
            3987479-3987590,3987661-3987712,3988080-3988140,
            3988220-3988377,3988705-3988787,3988897-3988945,
            3989122-3989185,3990225-3990317,3990410-3990543,
            3991364-3991585,3991815-3991937,3992103-3992267,
            3993064-3993450
          Length = 1479

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 327  SSASQACFSEELLFVHHRGSSCHHLTTLHPC 235
            SS+S +  S E L VH  G SC  LT L+ C
Sbjct: 1095 SSSSSSASSTERLKVHQSGKSCKELTGLYMC 1125


>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
          Length = 961

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 327 SSASQACFSEELLFVHHRGSSCHHLTTLHPC 235
           SS+S +  S E L  H  G SC  LT L+ C
Sbjct: 135 SSSSSSASSSERLKAHQSGKSCKELTGLYMC 165


>01_07_0224 - 42121011-42122486
          Length = 491

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = +3

Query: 339 KEKIILFTDSYDVMFLGNLDEIVKKFKSFPDTRVLFSAEQFCWPDAKLATQYPNIEVVSP 518
           + +++L   SY+  + G   EI+     +    +L      C+P A + T++  I  V P
Sbjct: 215 RRRVVLGVLSYNPWWAGTYGEIISGLSDYHVVDLLHDKRTHCFPGAIVGTRFHGILSVDP 274


>04_04_1372 + 33008740-33009130,33009485-33011544
          Length = 816

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -1

Query: 330 LSSASQACFSEELLFVHHRGSSCHHLTTLHPCPIPRHQYCTLWQNVKTS 184
           +S++S  CF EE   +   GSS        P    R   C LW+ V  S
Sbjct: 24  ISTSSHGCFVEERTALMDIGSSLTRSNGTAPRSWGRGDDCCLWERVNCS 72


>03_05_0331 -
           23233883-23233972,23234099-23234164,23234300-23234365,
           23234451-23234675,23234794-23235279
          Length = 310

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -2

Query: 467 PTKLFSRKKHTCIRKRLEFLYNLI*IPQEHDVITVSEKYYFLFVVSFHQL 318
           P  L++RK+   I +RL+ L NL+    + D+ T+ E+   +  V F QL
Sbjct: 231 PQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEE--AMHYVKFLQL 278


>03_02_0077 -
           5463347-5463445,5463557-5463622,5463736-5463801,
           5463886-5464182,5464268-5464714
          Length = 324

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 467 PTKLFSRKKHTCIRKRLEFLYNLI*IPQEHDVITVSEK 354
           P  L++RK+   I +RL+ L NLI    + D+ T+ E+
Sbjct: 242 PQSLYARKRRERINERLKILQNLIPNGTKVDISTMLEE 279


>11_06_0162 + 20818335-20818943
          Length = 202

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/60 (21%), Positives = 28/60 (46%)
 Frame = +3

Query: 339 KEKIILFTDSYDVMFLGNLDEIVKKFKSFPDTRVLFSAEQFCWPDAKLATQYPNIEVVSP 518
           + +++L    Y+  + G   EI+     +    +L    + C+P A + T++  I  V+P
Sbjct: 29  RRRVVLGVLLYNPWWAGTYGEIISGLLDYHVVDLLHDKRKHCFPGAIIGTRFHGILSVNP 88


>02_05_1131 -
           34328168-34328557,34328838-34328957,34329067-34329185,
           34329659-34329767,34329847-34329885,34341125-34341203,
           34341483-34341547,34341850-34341905,34342141-34342233,
           34342312-34342579
          Length = 445

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
 Frame = -1

Query: 372 HNCQ*KVLFSLCCQLS-----SASQACFSEELLFVHHRGSSCHHLTTLHPCPIPRHQYCT 208
           +N   + + S CC L      S S      +L   HH GS C+     +P   P  Q C+
Sbjct: 170 NNLPSRYMISDCCVLMNKPLISGSAVGLEGQLTVYHHNGSPCYRCLYPNPPSSPTSQSCS 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,368,499
Number of Sequences: 37544
Number of extensions: 370102
Number of successful extensions: 1088
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)