Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12b22f
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 6e-20
SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34) 32 0.35
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18) 31 1.1
SB_35670| Best HMM Match : ubiquitin (HMM E-Value=2) 30 1.9
SB_16220| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_45294| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_47862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_29841| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_29840| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_14878| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 94.7 bits (225), Expect = 6e-20
Identities = 63/171 (36%), Positives = 93/171 (54%), Gaps = 1/171 (0%)
Frame = +3
Query: 138 EVVVLTVATDDNHGLERFLRSAKVYNIDVEVLGKGEEWSGGDMNF-PGGGQKVILLKNRL 314
E++VLTVAT++ G RF+RS Y++ V V+G W GG++ PGG K+ LLK+ +
Sbjct: 35 ELLVLTVATEETDGYTRFMRSCSHYDVPVRVIGMNTSWKGGNVRTDPGGAHKINLLKDAV 94
Query: 315 EKLMKADNKEKIILFTDSYDVMFLGNLDEIVKKFKSFPDTRVLFSAEQFCWPDAKLATQY 494
+ D K +++F+D + L + K DT SA++F
Sbjct: 95 AEY--KDKKNLVLMFSDRISTLRLA----MAK------DT----SAQEF----------- 127
Query: 495 PNIEVVSPYLNSGGFIGYLPEIYEIINSNPIKDKDDDQLYYTXIYLDKDLR 647
+ +SG FIGY P ++IIN P+KD+DDDQL+YT IYLDK+ R
Sbjct: 128 -----IKNLYSSG-FIGYAPVFHQIINEKPVKDEDDDQLFYTNIYLDKEKR 172
>SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)
Length = 527
Score = 32.3 bits (70), Expect = 0.35
Identities = 27/97 (27%), Positives = 42/97 (43%)
Frame = -2
Query: 548 VTYKSTRVQIWTYNFNVWILSCKFCIRPTKLFSRKKHTCIRKRLEFLYNLI*IPQEHDVI 369
+T +S V I +++ V I S R + SR +H I R +I + HD I
Sbjct: 331 ITSRSRHVTITSHHIKVTITSRS---RHVTITSRSRHVTITSRSRH-GTIISRSRHHDNI 386
Query: 368 TVSEKYYFLFVVSFHQLLKPVFQKNYFLSTTGEVHVT 258
TV+ + + V + H + NY TT H+T
Sbjct: 387 TVTTCHNHITVTTCHNHITSHQGHNYITVTTCHNHIT 423
>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
Length = 593
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 114 NSHTQATDEVVVLTVATDDNHGLERFLRSAKVYNIDVEVLGKGEE 248
NS A++E+ +LT + D + LRS K ++V+ +G+G+E
Sbjct: 527 NSVVTASEEISLLTDSEGDQRVVTEELRSDKRIRVNVQGMGEGDE 571
>SB_35670| Best HMM Match : ubiquitin (HMM E-Value=2)
Length = 341
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 300 LKNRLEKLMKADNKEKIILFTDS-YDVMFLGNLDEIVKKFKSFPDT 434
LK L +L K D+ ++ I + D+ ++ GN ++V FPDT
Sbjct: 288 LKGLLYRLYKVDSSDQKISYLDTKICTIYTGNFRDVVNGLVQFPDT 333
>SB_16220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 481
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -3
Query: 502 MFGY*VASFASGQQNCSAEKSTRVSGKDLNFFTISS 395
+FGY + S G Q CS R NFFT S
Sbjct: 317 IFGYDIISDGRGNQRCSVHPDRRTLKASFNFFTFWS 352
>SB_45294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 59
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -2
Query: 518 WTYNFNVWILSCKF--CIRPTKLFSRKKHTCI 429
W + F ++ CK C+ P +LFS K C+
Sbjct: 7 WLFAFYIYACPCKLTVCVSPLRLFSCKLTVCV 38
>SB_47862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 30 VELIFMMWFTQ-KMGLFIQLILCVFVILFNSH 122
V++ FM+ FT + GLF +++C ++I H
Sbjct: 229 VDMPFMLLFTDIRQGLFYAMLMCFWIIFTGEH 260
>SB_29841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 261 HHLTTLHPCPIPRHQYCT 208
+H+TTL+PC R Q CT
Sbjct: 27 NHITTLYPCMTKRLQTCT 44
>SB_29840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 261 HHLTTLHPCPIPRHQYCT 208
+H+TTL+PC R Q CT
Sbjct: 4 NHITTLYPCMTKRLQTCT 21
>SB_14878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -1
Query: 336 CQLSSASQACFSEELLFVHHRGSSCHHLTTLHP-CPIPRHQYCTLWQNVKTSLGHGYRQW 160
C+L + AC +E+L + GSS H CP+ RHQ T + Y +W
Sbjct: 156 CELLPEA-ACMDQEML-IQASGSSIQHQRYRQSGCPVTRHQRYRQSGCPVTRVSRNYSKW 213
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,342,743
Number of Sequences: 59808
Number of extensions: 439079
Number of successful extensions: 1255
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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