Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12b21r
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 54 2e-08
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 46 7e-06
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 37 0.003
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 29 0.66
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 2.6
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 25 8.1
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 8.1
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 54.0 bits (124), Expect = 2e-08
Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = -2
Query: 484 WHSMALSEFGDLYVWGLNDTGQLGIK-ESENDLKSYALPKLVDLYDDNEEVHLQIKDIAC 308
+HS A+ G +Y WGLN T Q GI+ E E + P LVD + +K I
Sbjct: 289 YHSFAIDNKGRVYAWGLNITRQCGIEVEDEEEGAVITKPTLVDALEG-----YNVKSITG 343
Query: 307 GSKHSVLLLEDGSVWTTGANKYGQLACP 224
G H++ LLEDG V G + QL P
Sbjct: 344 GEHHTLALLEDGRVLAWGRDDRHQLGIP 371
Score = 40.3 bits (90), Expect = 3e-04
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Frame = -2
Query: 616 YVAGSNLFNQWRLQLGQDDTSNLET-PTQVEXXXXXXXXXXXXXGWHSMALSEFGDLYVW 440
Y G N+ Q +++ ++ + T PT V+ H++AL E G + W
Sbjct: 301 YAWGLNITRQCGIEVEDEEEGAVITKPTLVDALEGYNVKSITGGEHHTLALLEDGRVLAW 360
Query: 439 GLNDTGQLGIKESENDLKSYALPKLVDLYDDNEEV---HLQIKDIACGSKHSVLLLEDGS 269
G +D QLGI ++ K + Y + + + CG+ H++ + DG
Sbjct: 361 GRDDRHQLGIPDNALPETVVKDEKGNNYYLSTPTIIPGLTNVIQVVCGTHHNLAVTSDGK 420
Query: 268 VWTTGA 251
V++ G+
Sbjct: 421 VYSWGS 426
Score = 37.1 bits (82), Expect = 0.002
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = -2
Query: 454 DLYVWGLNDTGQLGIKESENDLKSYALPKLVDLYDDNEEVHLQIKDIACGSKHSVLLLED 275
++YV+G +LG+ E E D+ Y P+L + ++ + + D+A G HS L D
Sbjct: 72 NVYVFGSGSMNELGMGEEEMDVV-YR-PRLNPILSTDK---VGVVDLAVGGMHSAALSHD 126
Query: 274 GSVWTTGAN 248
G V+T G N
Sbjct: 127 GRVYTWGVN 135
Score = 36.3 bits (80), Expect = 0.004
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 7/134 (5%)
Frame = -2
Query: 634 TTTMEYYVAGSNLFNQWRLQLGQDDTSNLETP--TQVEXXXXXXXXXXXXXGWHSMALSE 461
T + YV GS N+ L +G+++ + P + G HS ALS
Sbjct: 68 TERLNVYVFGSGSMNE--LGMGEEEMDVVYRPRLNPILSTDKVGVVDLAVGGMHSAALSH 125
Query: 460 FGDLYVWGLNDTGQLG-----IKESENDLKSYALPKLVDLYDDNEEVHLQIKDIACGSKH 296
G +Y WG+ND LG K+ D L + + HL++ + C
Sbjct: 126 DGRVYTWGVNDDYALGRLTKDQKDENGDKVDNDLLEGTPSKVEGALSHLRVTKVICSDNL 185
Query: 295 SVLLLEDGSVWTTG 254
+ + ++G +T G
Sbjct: 186 TAAITDNGCCFTWG 199
Score = 28.7 bits (61), Expect = 0.87
Identities = 22/78 (28%), Positives = 32/78 (41%)
Frame = -2
Query: 481 HSMALSEFGDLYVWGLNDTGQLGIKESENDLKSYALPKLVDLYDDNEEVHLQIKDIACGS 302
H +AL+ G +Y WG QLG + E P+ + L + I + GS
Sbjct: 237 HIIALTTTGKVYTWGNGQQFQLGRRMLERRRLQGLTPQPLALKN--------IISVGAGS 288
Query: 301 KHSVLLLEDGSVWTTGAN 248
HS + G V+ G N
Sbjct: 289 YHSFAIDNKGRVYAWGLN 306
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 45.6 bits (103), Expect = 7e-06
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = -2
Query: 481 HSMALSEFGDLYVWGLNDTGQLGIKESE--NDLKSYALPKLVDLYDDNEEVHLQIKDIAC 308
HS+AL++FG +Y WG N +G+LG+ E D P+ + + D QI +A
Sbjct: 258 HSLALTKFGSIYSWGKNGSGELGLSNDELKKDDPIQITPRRISAFKD-----YQIIGMAA 312
Query: 307 GSKHSVLLLEDGSVWTTGANKYGQL 233
G +SV D +++ G N GQL
Sbjct: 313 GKSYSV-AWTDTDIYSWGLNN-GQL 335
Score = 25.4 bits (53), Expect = 8.1
Identities = 29/141 (20%), Positives = 60/141 (42%), Gaps = 11/141 (7%)
Frame = -2
Query: 622 EYYVAGSNLFNQWRLQLGQDDTS---------NLETPTQVEXXXXXXXXXXXXXGWHSMA 470
E Y G+N+ N + G++ +S E+PT + +HS+
Sbjct: 150 ELYGFGTNVNNTLGIANGKEPSSPERVFLLKNQTESPTSGQLFSRDKILDVQASKFHSVV 209
Query: 469 LSE--FGDLYVWGLNDTGQLGIKESENDLKSYALPKLVDLYDDNEEVHLQIKDIACGSKH 296
L++ ++YV G+ G++G ++ +P ++ ++ I+ H
Sbjct: 210 LTDEPSQNVYVCGIGAGGRIGFN-TDVQYNFIPIPGIIH----------KVIQISVSHTH 258
Query: 295 SVLLLEDGSVWTTGANKYGQL 233
S+ L + GS+++ G N G+L
Sbjct: 259 SLALTKFGSIYSWGKNGSGEL 279
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -2
Query: 325 IKDIACGSKHSVLLLEDGSVWTTGANKYGQ 236
I+ I+CG H++LL ED +W G N+ GQ
Sbjct: 33 IEKISCGGNHTLLLDEDSQLWACGDNRKGQ 62
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -2
Query: 352 DDNEEVHLQIKDI---ACGSKHSVLLLEDGSVWTTGANKYG 239
D ++ H + DI A G++H++L + GSV G N++G
Sbjct: 270 DRAQKAHTKASDIVQIASGTEHNILRTKKGSVLIYGWNEHG 310
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 29.1 bits (62), Expect = 0.66
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = -2
Query: 433 NDTGQLGIKESENDLKSYALPKLVDLYDDNEEVHLQI-----KDIACGSKHSVLLLED 275
N++ QL I + ++ ++L K+ +DD E LQI KD+ C + + + +E+
Sbjct: 1819 NNSSQLSIDSVRSGMRPFSLSKVPHQFDDEEGKALQIFREKLKDLNCKNSMNEMCIEN 1876
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = -2
Query: 478 SMALSEFGDLYVWGLNDTGQLGIKESENDLKSYALP---KLVDLYDDNEEVHLQIKDIAC 308
++ E +LY+ N TG+L IK E L+ P L ++ +E+ + ++ ++
Sbjct: 987 TLRTKELFELYLSQRNFTGKLVIKHQEEFLEPRVYPANRNLATAHNRHEKSKVSVQGLSG 1046
Query: 307 GSKHSVLLLEDGSVW 263
G K + S+W
Sbjct: 1047 GEKSFATICMLLSIW 1061
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 364 VDLYDDNEEVHLQIKDIACGSKHSVLLLEDGSVWTTGA 251
+D+YDD H Q CG + + + SV TG+
Sbjct: 155 LDVYDDESLYHPQTHKEDCGKRLQTRIQPEESVGKTGS 192
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 277 DGSVWTTGANKYGQLA 230
DG VW T AN YG A
Sbjct: 225 DGCVWGTSANPYGNWA 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,760
Number of Sequences: 5004
Number of extensions: 63145
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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