Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b21r
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   5.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.7  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -2

Query: 652 YLCLLFTTTMEYYVAGSNLF-NQWRLQLGQDDTSNLETPTQ 533
           Y+C L    + Y +AGS  F N W L    D   +  +P +
Sbjct: 657 YICYLGKAYLMYAIAGSQCFINIWLLGSRLDWEDHASSPLE 697


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 482 AFHGTQ*IWGSLCLGL 435
           A HG   IWG + +GL
Sbjct: 342 ATHGASGIWGIIAIGL 357


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 110 LMKPFKTFVKYIMSNYNRLVDSNTFT*K 27
           L  P    + +I +NY  LV  NTFT K
Sbjct: 613 LSVPDSVELLFINNNYINLVRPNTFTDK 640


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 660 LCNICVYCLQQQWSIT 613
           + N+CV  L + W+IT
Sbjct: 134 ILNLCVISLDRYWAIT 149


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 118 TYINCIQLQLSMVHISVYMLL*LH 189
           TY NCI   ++   +S  ++L  H
Sbjct: 296 TYFNCIMFMVASSVVSTILILNYH 319


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 659 CVISVFIVYNNNGVLRCRLK 600
           C+I VF+ YN    LR R +
Sbjct: 356 CIIMVFLYYNIFKALRNRAR 375


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,440
Number of Sequences: 438
Number of extensions: 4318
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)