Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b20r
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.66 
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   4.6  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   8.1  

>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 657 STVTPKESKLDSSIKTDCEDIKEDKDNGKNEESTPAKATGK 535
           ST+   E KLD+ I     D+K     G+ + S P++ T K
Sbjct: 117 STIDNNERKLDNEIDNYKHDVKYSPYKGQGKTSNPSQGTTK 157


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 106 VIRWSMHHKFHVFQFPRQLFFRANDICSRIKTFLW-RW 216
           + R+S+ ++    +F + L+F  + IC R    +W +W
Sbjct: 224 ISRFSIFYRSSYKKFKQDLYFNLHSICDRNTVHMWLQW 261


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 203 NVLILLHISLALKKSCLGNWN 141
           ++LILL +S  + + CL NW+
Sbjct: 143 SILILLFLSHCVLRCCLSNWS 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,539
Number of Sequences: 5004
Number of extensions: 52874
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)