Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b20r
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0061 + 483116-483757,483891-484046,484171-484262,484410-48...    29   4.8  
11_06_0610 - 25449085-25453284                                         28   6.4  
04_04_0287 - 24156285-24156389,24156477-24156596,24156654-241567...    28   6.4  

>01_01_0061 +
           483116-483757,483891-484046,484171-484262,484410-485076
          Length = 518

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
 Frame = -3

Query: 231 PTKASPP-PEKCFDPATYIIGPEEELPRKLEYMEFVMHAPSDYYKASNSPYPLTDNELNN 55
           P K  PP P      A+ +      LPR      FV     D+ K   SP+P     ++ 
Sbjct: 162 PVKERPPAPSPARSTASSLRKSSSVLPRITRSKSFVADRAPDHPKIPKSPFPAEKISMSC 221

Query: 54  YT 49
           YT
Sbjct: 222 YT 223


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -3

Query: 231  PTKASPPPEKCFDPATYIIGPEEELPRKLEYM--EFVMHAPSDYYKASNSPYPL 76
            P K++PPPEK   P T  I      P + EYM    V  +P    K+   P P+
Sbjct: 986  PAKSTPPPEKPLPPHTPTINSSP--PSEEEYMPPSPVKSSPPPAEKSQPPPSPV 1037


>04_04_0287 -
           24156285-24156389,24156477-24156596,24156654-24156740,
           24156905-24157057,24157516-24157635,24157788-24157949,
           24158029-24158247,24158574-24158616,24159147-24159210,
           24159353-24159458,24159585-24159704,24159831-24159911,
           24160008-24160050,24160308-24160369,24160477-24160563,
           24161004-24161050,24161144-24161276,24161419-24161487,
           24161924-24162010,24162317-24162448
          Length = 679

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 627 DSSIKTDCEDIKEDKDNGKNEESTPAKATGKGTRKSTR 514
           D + +TD +D + D+D  KN + + A +  KG RK+ R
Sbjct: 514 DDANQTDEDDEESDEDAEKNVDMSTAVSLIKGERKNLR 551


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,801,928
Number of Sequences: 37544
Number of extensions: 352707
Number of successful extensions: 1131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)