Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b20r
         (710 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC031091-1|AAH31091.1|  269|Homo sapiens GATAD1 protein protein.      176   7e-44
BC019350-1|AAH19350.1|  269|Homo sapiens GATA zinc finger domain...   176   7e-44
AK026142-1|BAB15374.1|  269|Homo sapiens protein ( Homo sapiens ...   176   7e-44
AC000064-2|AAB46345.1|  140|Homo sapiens WUGSC:H_RG083M05.2 prot...   149   7e-36
X75546-1|CAA53233.1|  376|Homo sapiens fibromodulin protein.           30   7.1  

>BC031091-1|AAH31091.1|  269|Homo sapiens GATAD1 protein protein.
          Length = 269

 Score =  176 bits (428), Expect = 7e-44
 Identities = 79/143 (55%), Positives = 109/143 (76%), Gaps = 2/143 (1%)
 Frame = -3

Query: 456 RGRGRRSLFK-RQPLKAPXXXXXXXTSDSVFYQGMYMQVGDIVSMTDI-DGGTYYAQIRG 283
           +G+GRR +FK + P+KAP       T++S+FY+G+Y Q+GD+VS+ D  DG  YYAQIRG
Sbjct: 113 KGKGRRHIFKLKNPIKAPESVSTIITAESIFYKGVYYQIGDVVSVIDEQDGKPYYAQIRG 172

Query: 282 FLTDEYCEKSAAVTWLLPTKASPPPEKCFDPATYIIGPEEELPRKLEYMEFVMHAPSDYY 103
           F+ D+YCEKSAA+TWL+PT +SP  +  FDPA+YIIGPEE+LPRK+EY+EFV HAPS+Y+
Sbjct: 173 FIQDQYCEKSAALTWLIPTLSSPRDQ--FDPASYIIGPEEDLPRKMEYLEFVCHAPSEYF 230

Query: 102 KASNSPYPLTDNELNNYTGFVWT 34
           K+ +SP+P          G++WT
Sbjct: 231 KSRSSPFPTVPTRPEK--GYIWT 251


>BC019350-1|AAH19350.1|  269|Homo sapiens GATA zinc finger domain
           containing 1 protein.
          Length = 269

 Score =  176 bits (428), Expect = 7e-44
 Identities = 79/143 (55%), Positives = 109/143 (76%), Gaps = 2/143 (1%)
 Frame = -3

Query: 456 RGRGRRSLFK-RQPLKAPXXXXXXXTSDSVFYQGMYMQVGDIVSMTDI-DGGTYYAQIRG 283
           +G+GRR +FK + P+KAP       T++S+FY+G+Y Q+GD+VS+ D  DG  YYAQIRG
Sbjct: 113 KGKGRRHIFKLKNPIKAPESVSTIITAESIFYKGVYYQIGDVVSVIDEQDGKPYYAQIRG 172

Query: 282 FLTDEYCEKSAAVTWLLPTKASPPPEKCFDPATYIIGPEEELPRKLEYMEFVMHAPSDYY 103
           F+ D+YCEKSAA+TWL+PT +SP  +  FDPA+YIIGPEE+LPRK+EY+EFV HAPS+Y+
Sbjct: 173 FIQDQYCEKSAALTWLIPTLSSPRDQ--FDPASYIIGPEEDLPRKMEYLEFVCHAPSEYF 230

Query: 102 KASNSPYPLTDNELNNYTGFVWT 34
           K+ +SP+P          G++WT
Sbjct: 231 KSRSSPFPTVPTRPEK--GYIWT 251


>AK026142-1|BAB15374.1|  269|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22489 fis, clone HRC10951. ).
          Length = 269

 Score =  176 bits (428), Expect = 7e-44
 Identities = 79/143 (55%), Positives = 109/143 (76%), Gaps = 2/143 (1%)
 Frame = -3

Query: 456 RGRGRRSLFK-RQPLKAPXXXXXXXTSDSVFYQGMYMQVGDIVSMTDI-DGGTYYAQIRG 283
           +G+GRR +FK + P+KAP       T++S+FY+G+Y Q+GD+VS+ D  DG  YYAQIRG
Sbjct: 113 KGKGRRHIFKLKNPIKAPESVSTIITAESIFYKGVYYQIGDVVSVIDEQDGKPYYAQIRG 172

Query: 282 FLTDEYCEKSAAVTWLLPTKASPPPEKCFDPATYIIGPEEELPRKLEYMEFVMHAPSDYY 103
           F+ D+YCEKSAA+TWL+PT +SP  +  FDPA+YIIGPEE+LPRK+EY+EFV HAPS+Y+
Sbjct: 173 FIQDQYCEKSAALTWLIPTLSSPRDQ--FDPASYIIGPEEDLPRKMEYLEFVCHAPSEYF 230

Query: 102 KASNSPYPLTDNELNNYTGFVWT 34
           K+ +SP+P          G++WT
Sbjct: 231 KSRSSPFPTVPTRPEK--GYIWT 251


>AC000064-2|AAB46345.1|  140|Homo sapiens WUGSC:H_RG083M05.2
           protein.
          Length = 140

 Score =  149 bits (362), Expect = 7e-36
 Identities = 67/113 (59%), Positives = 88/113 (77%), Gaps = 1/113 (0%)
 Frame = -3

Query: 369 FYQGMYMQVGDIVSMTDI-DGGTYYAQIRGFLTDEYCEKSAAVTWLLPTKASPPPEKCFD 193
           F QG+Y Q+GD+VS+ D  DG  YYAQIRGF+ D+YCEKSAA+TWL+PT +SP  +  FD
Sbjct: 14  FPQGVYYQIGDVVSVIDEQDGKPYYAQIRGFIQDQYCEKSAALTWLIPTLSSPRDQ--FD 71

Query: 192 PATYIIGPEEELPRKLEYMEFVMHAPSDYYKASNSPYPLTDNELNNYTGFVWT 34
           PA+YIIGPEE+LPRK+EY+EFV HAPS+Y+K+ +SP+P          G++WT
Sbjct: 72  PASYIIGPEEDLPRKMEYLEFVCHAPSEYFKSRSSPFPTVPTRPEK--GYIWT 122


>X75546-1|CAA53233.1|  376|Homo sapiens fibromodulin protein.
          Length = 376

 Score = 30.3 bits (65), Expect = 7.1
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = -3

Query: 261 EKSAAVTWLLPTKASPP--PEKCFDPATYIIGPEEELPRKLEYMEFVMHAPSDYYKASNS 88
           ++  A T+  P+   P   P++C  P  ++     +  R L+Y+ FV       Y  +N 
Sbjct: 58  DEGPAYTYGSPSPPDPRDCPQECDCPPNFLTAMYCD-NRNLKYLPFVPSRMKYVYFQNNQ 116

Query: 87  PYPLTDNELNNYTGFVWTSMEAKERT 10
              + +   +N TG +W ++   + T
Sbjct: 117 ITSIQEGVFDNATGLLWIALHGNQIT 142


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,174,159
Number of Sequences: 237096
Number of extensions: 1954882
Number of successful extensions: 5706
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5698
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)