Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b20r
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical ...    29   2.5  
U70857-11|AAN84874.1|  295|Caenorhabditis elegans Hypothetical p...    29   3.3  
U70857-10|AAB09175.1|  385|Caenorhabditis elegans Hypothetical p...    29   3.3  
AF067217-1|AAY55828.1|  191|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical
           protein W09G12.7 protein.
          Length = 368

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -3

Query: 696 SAENGQICNDCHFSTVTPKESKLDSSIKTDCEDIKEDKDNGKNEESTPAK 547
           ++++ +  +D   S    K+SK DSS  +D  D  +  D+GK ++   +K
Sbjct: 85  NSDSSESSDDDKKSKKKKKKSKKDSSDSSDSSDSSDSSDDGKKKKKKKSK 134


>U70857-11|AAN84874.1|  295|Caenorhabditis elegans Hypothetical
           protein C10G8.8b protein.
          Length = 295

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 675 CNDCHFSTVTPKESKLDSSIKTDCEDIKEDKDNGKNEESTPAKAT 541
           C D    T TPK S+     +T  E+ K DK+N +N + T  +++
Sbjct: 224 CQDQRTETQTPKNSEPAQEEETRAEESK-DKENTENSDETKEESS 267


>U70857-10|AAB09175.1|  385|Caenorhabditis elegans Hypothetical
           protein C10G8.8a protein.
          Length = 385

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 675 CNDCHFSTVTPKESKLDSSIKTDCEDIKEDKDNGKNEESTPAKAT 541
           C D    T TPK S+     +T  E+ K DK+N +N + T  +++
Sbjct: 314 CQDQRTETQTPKNSEPAQEEETRAEESK-DKENTENSDETKEESS 357


>AF067217-1|AAY55828.1|  191|Caenorhabditis elegans Hypothetical
           protein F56A6.5 protein.
          Length = 191

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 93  CSLCSNQMEHASQIPCI 143
           CS+C ++ +H +QIPCI
Sbjct: 6   CSICYDEYDHDTQIPCI 22


>Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical
           protein F25D7.3 protein.
          Length = 817

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 663 HFSTVTPKESKLDSSIKTDCEDIKEDKDNG 574
           H+ T T KE  +  S++ D  DIK + D G
Sbjct: 638 HWKTTTCKEEDMKDSMRDDLMDIKGEIDEG 667


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,283,299
Number of Sequences: 27780
Number of extensions: 309526
Number of successful extensions: 1085
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)