Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b20r
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.2  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    23   2.2  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    23   2.2  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    23   2.2  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    23   2.2  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    23   2.2  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    23   2.2  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    23   2.2  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    23   2.2  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    23   2.2  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    23   2.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   6.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -3

Query: 642 KESKLDSSIKTDCEDIKEDKDNGKNEESTPAKATGKGTRKST 517
           K  KLD         ++ +KD G  E  T       GT++ T
Sbjct: 300 KRLKLDEDADGAVSPLRREKDRGSREYPTSNATDTDGTKERT 341


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 30  SKSIQNQYNYSVHYQSVGMDCCSLCSNQMEHASQIPCIPV 149
           + S+ N YNY+ +Y +      +     + +  QIP IPV
Sbjct: 85  NNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIP-IPV 123


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 30  SKSIQNQYNYSVHYQSVGMDCCSLCSNQMEHASQIPCIPV 149
           + S+ N YNY+ +Y +      +     + +  QIP IPV
Sbjct: 85  NNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIP-IPV 123


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 30  SKSIQNQYNYSVHYQSVGMDCCSLCSNQMEHASQIPCIPV 149
           + S+ N YNY+ +Y +      +     + +  QIP IPV
Sbjct: 85  NNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIP-IPV 123


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 30  SKSIQNQYNYSVHYQSVGMDCCSLCSNQMEHASQIPCIPV 149
           + S+ N YNY+ +Y +      +     + +  QIP IPV
Sbjct: 85  NNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIP-IPV 123


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 30  SKSIQNQYNYSVHYQSVGMDCCSLCSNQMEHASQIPCIPV 149
           + S+ N YNY+ +Y +      +     + +  QIP IPV
Sbjct: 85  NNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIP-IPV 123


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 30  SKSIQNQYNYSVHYQSVGMDCCSLCSNQMEHASQIPCIPV 149
           + S+ N YNY+ +Y +      +     + +  QIP IPV
Sbjct: 85  NNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIP-IPV 123


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 30  SKSIQNQYNYSVHYQSVGMDCCSLCSNQMEHASQIPCIPV 149
           + S+ N YNY+ +Y +      +     + +  QIP IPV
Sbjct: 85  NNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIP-IPV 123


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 30  SKSIQNQYNYSVHYQSVGMDCCSLCSNQMEHASQIPCIPV 149
           + S+ N YNY+ +Y +      +     + +  QIP IPV
Sbjct: 85  NNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIP-IPV 123


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 30  SKSIQNQYNYSVHYQSVGMDCCSLCSNQMEHASQIPCIPV 149
           + S+ N YNY+ +Y +      +     + +  QIP IPV
Sbjct: 318 NNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIP-IPV 356


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 30  SKSIQNQYNYSVHYQSVGMDCCSLCSNQMEHASQIPCIPV 149
           + S+ N YNY+ +Y +      +     + +  QIP IPV
Sbjct: 318 NNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIP-IPV 356


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 292 LGIVCATINVSHRNNITN 345
           LGI C  +   H  N+TN
Sbjct: 10  LGITCQGVTDIHSRNLTN 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,590
Number of Sequences: 438
Number of extensions: 3781
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)