Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b20f
         (656 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   5.1  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   6.7  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.9  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   8.9  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   8.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.9  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 138 CKSVLALCLYFFNLNR*IF*NKQIVAFKSKTKTKSVYLSI 19
           C  ++ LC+Y+F     IF      AF       + YL++
Sbjct: 290 CALIILLCIYYFCRAFIIFPTHFYCAFSLYPLKSTFYLNV 329


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 255 KTDCEDIKEDKDNGKNEESTPAKATGK 335
           K   ED+ ED+D    +E    K T K
Sbjct: 244 KPKIEDVGEDEDEDTKKEDKKKKKTIK 270


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 573 HSMCHHQCQSSKQYHQ 526
           H M HH  +   Q+HQ
Sbjct: 165 HHMGHHMQEQHPQHHQ 180


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 159 NRWFRIDCKSVLALCLYFF 103
           NR+F +   ++  +  YFF
Sbjct: 224 NRYFEVQVLTIFGVSFYFF 242


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 159 NRWFRIDCKSVLALCLYFF 103
           NR+F +   ++  +  YFF
Sbjct: 220 NRYFEVQVLTIFGVSFYFF 238


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 573 HSMCHHQCQSSKQYHQ 526
           H M HH  +   Q+HQ
Sbjct: 167 HHMGHHMQEQHPQHHQ 182


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,443
Number of Sequences: 336
Number of extensions: 3032
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)