Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b20f
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    42   1e-04
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    31   0.15 
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    31   0.19 
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.59 
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        25   9.6  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   9.6  

>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
 Frame = +3

Query: 123 PKPICSQCGTNDSMLWRSAENGQ-ICNDCH-FSTVTPKESKLDSSIKTDCEDIKEDKDNG 296
           P P C+ C T  + LWR + +GQ +CN C  F  +      L  S+KT   D+ + ++ G
Sbjct: 631 PTPTCTNCQTRTTPLWRRSPDGQPLCNACGLFMKINGVVRPL--SLKT---DVIKKRNRG 685

Query: 297 KNEESTPAKATGK--GTRKST 353
               +TP ++ G+   TRKS+
Sbjct: 686 VGTSATPKQSGGRKGSTRKSS 706


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 135 CSQCGTNDSMLWRSAENGQ-ICNDC 206
           C  C T ++ LWR  E+G  ICN C
Sbjct: 172 CQNCATTNTPLWRRDESGNPICNAC 196


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 132 ICSQCGTNDSMLWRSAENGQ-ICNDC 206
           +C+ C +  + LWR   +GQ +CN C
Sbjct: 418 VCANCSSTKTSLWRKDRHGQTVCNAC 443



 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +3

Query: 132 ICSQCGTNDSMLWR--SAENGQICNDC 206
           +C  CG  ++ LWR  S +   +CN C
Sbjct: 364 VCFNCGVTETPLWRRTSDKLNFLCNAC 390


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 213 STVTPKESKLDSSIKTDCEDIKEDKDNGKNEESTPAKATGK 335
           ST+   E KLD+ I     D+K     G+ + S P++ T K
Sbjct: 117 STIDNNERKLDNEIDNYKHDVKYSPYKGQGKTSNPSQGTTK 157


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 72  VYFRIFIYLN*KNTNIMPKPICSQCGTNDSML 167
           V F  ++Y +  +TNI P P C      D+ +
Sbjct: 40  VNFTTYVYPDTNSTNIFPMPKCQNITLEDATI 71


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
 Frame = +3

Query: 129 PICSQCGTNDSMLWRSAENGQI----CNDC 206
           P C  CGT  +  WR+A    I    CN C
Sbjct: 349 PYCQNCGTIKTANWRNATYMNITLMLCNAC 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,280
Number of Sequences: 5004
Number of extensions: 45461
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)