Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12b20f
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0560 - 4413174-4414469 31 1.1
06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818 30 1.4
02_02_0094 - 6705094-6705564,6705759-6706139,6706287-6706496 30 1.4
07_03_1693 - 28756331-28756435,28756558-28756664,28757114-287572... 29 3.3
11_04_0318 + 16336356-16336358,16337254-16337484,16337580-163376... 29 4.3
04_04_0287 - 24156285-24156389,24156477-24156596,24156654-241567... 28 5.7
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 28 7.5
01_06_0154 - 27049218-27049517,27049679-27050107 28 7.5
11_02_0069 - 8002358-8003407,8003563-8003678,8003770-8003809,800... 27 9.9
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351... 27 9.9
02_01_0364 + 2615056-2615239,2615573-2615637,2616016-2616103,261... 27 9.9
>11_01_0560 - 4413174-4414469
Length = 431
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +3
Query: 105 KNTNIMPKPICSQCGTNDSMLWRSAEN--GQICNDC 206
+N + CS CGT+++ WR + G +CN C
Sbjct: 353 RNRQVRKDRRCSHCGTSETPQWRMGPDGPGTLCNAC 388
>06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818
Length = 375
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = +3
Query: 132 ICSQCGTNDSMLWRSAENG--QICNDC 206
+CS C T + LWRS G +CN C
Sbjct: 187 VCSDCNTTKTPLWRSGPCGPKSLCNAC 213
>02_02_0094 - 6705094-6705564,6705759-6706139,6706287-6706496
Length = 353
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = +3
Query: 132 ICSQCGTNDSMLWRSAENG--QICNDC 206
+CS C T + LWRS G +CN C
Sbjct: 177 VCSDCNTTKTPLWRSGPCGPKSLCNAC 203
>07_03_1693 -
28756331-28756435,28756558-28756664,28757114-28757245,
28757412-28757478,28757553-28757635,28757824-28757905,
28763101-28763177,28763278-28763361,28763443-28763512,
28763625-28763713,28763801-28764487,28765700-28765997
Length = 626
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +3
Query: 141 QCGTNDSMLWRSAENGQICNDCHFSTVTPKESKLDSSIKTD----CEDIKEDKD 290
+C N+ W+ +NG+ + C S K K K D CEDI E KD
Sbjct: 468 RCQINNGGCWKETKNGKTVSAC--SNEESKGCKCPPGFKGDGIKSCEDIDECKD 519
>11_04_0318 +
16336356-16336358,16337254-16337484,16337580-16337654,
16337741-16337839,16339010-16339121,16339586-16339713,
16340022-16340141,16340967-16341047,16341460-16341537,
16341616-16341708,16341880-16341934,16342795-16342871,
16343008-16343079,16343159-16343242,16343620-16343739,
16343824-16343892,16344721-16344798,16345684-16345822,
16345990-16346154,16346239-16346384,16346501-16346680,
16346834-16346922,16346997-16347028,16347120-16347226
Length = 810
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 135 CSQCGTNDSMLWRSAENGQ--ICNDCHFSTVTPKE 233
CS+C + R + G+ ICN C FS TP+E
Sbjct: 148 CSRCKAYINPFMRFVDQGRRFICNLCGFSNDTPRE 182
>04_04_0287 -
24156285-24156389,24156477-24156596,24156654-24156740,
24156905-24157057,24157516-24157635,24157788-24157949,
24158029-24158247,24158574-24158616,24159147-24159210,
24159353-24159458,24159585-24159704,24159831-24159911,
24160008-24160050,24160308-24160369,24160477-24160563,
24161004-24161050,24161144-24161276,24161419-24161487,
24161924-24162010,24162317-24162448
Length = 679
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 243 DSSIKTDCEDIKEDKDNGKNEESTPAKATGKGTRKSTR 356
D + +TD +D + D+D KN + + A + KG RK+ R
Sbjct: 514 DDANQTDEDDEESDEDAEKNVDMSTAVSLIKGERKNLR 551
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 135 CSQCGTNDSMLWRSAENGQ--ICNDCHFSTVTPKE 233
CS+C + R + G+ +CN C FS TP+E
Sbjct: 430 CSRCKAYINPFMRFIDQGKHFVCNLCGFSNDTPRE 464
>01_06_0154 - 27049218-27049517,27049679-27050107
Length = 242
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = +3
Query: 135 CSQCGTNDSMLWRSAENG--QICNDC 206
C+ C T + LWR+ G +CN C
Sbjct: 124 CANCDTTSTPLWRNGPRGPKSLCNAC 149
>11_02_0069 -
8002358-8003407,8003563-8003678,8003770-8003809,
8003967-8004005
Length = 414
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 186 GQICNDCHFSTVTPKESKLDSSIKTDCEDIKEDK 287
G + CH +TPK+ S + DC +D+
Sbjct: 222 GDGMSSCHADKITPKDGNEQSKLSVDCTRTCKDR 255
>10_08_0267 -
16333239-16333820,16333904-16334842,16334920-16335172,
16336837-16337063,16338189-16339388
Length = 1066
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Frame = +3
Query: 135 CSQCGTNDSMLWRSAENGQ--ICNDC 206
C CGT ++ WR G +CN C
Sbjct: 603 CRHCGTTETPQWRHGPEGHRTLCNAC 628
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = +3
Query: 135 CSQCGTNDSMLWRSA--ENGQICNDC 206
C+ CGT + W S G++CN C
Sbjct: 993 CTHCGTTKTPAWLSGPDSRGKLCNAC 1018
>02_01_0364 +
2615056-2615239,2615573-2615637,2616016-2616103,
2616202-2616269,2616653-2616703,2617168-2617285,
2617463-2617509,2617603-2617629,2617806-2617881,
2618157-2618296,2618623-2618721
Length = 320
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = +3
Query: 147 GTNDSMLWRSAENGQICNDCHFSTVTPKESKLDSSIKTDCEDIKEDKDNGKNEESTPAKA 326
GT D + S E G + H S D ++ G+ + KA
Sbjct: 242 GTLDGFTFDSDEEGDKLPEPHASQNDQNNEDGDQPKAKTKRKAEKPAGKGQKKAKVAGKA 301
Query: 327 TGKGTRKSTRSTR 365
T KGTRK+ + R
Sbjct: 302 TKKGTRKTQTTKR 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,243,916
Number of Sequences: 37544
Number of extensions: 283947
Number of successful extensions: 833
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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