Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b20f
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36369| Best HMM Match : GATA (HMM E-Value=0.00095)                 106   1e-23
SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)                  32   0.47 
SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)            31   0.83 
SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)                    31   0.83 
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)                        31   1.1  
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_38912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_50607| Best HMM Match : Vicilin_N (HMM E-Value=0.88)                28   5.8  
SB_5137| Best HMM Match : Phage_integrase (HMM E-Value=0.11)           28   5.8  
SB_42921| Best HMM Match : Chordopox_A13L (HMM E-Value=9.6)            28   5.8  
SB_25237| Best HMM Match : Phage_integrase (HMM E-Value=0.2)           28   5.8  
SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_54413| Best HMM Match : Disintegrin (HMM E-Value=3.2)               28   7.7  
SB_51594| Best HMM Match : p450 (HMM E-Value=3.5e-35)                  28   7.7  
SB_34029| Best HMM Match : fn1 (HMM E-Value=2.4)                       28   7.7  
SB_50781| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_41783| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_4755| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_36369| Best HMM Match : GATA (HMM E-Value=0.00095)
          Length = 225

 Score =  106 bits (255), Expect = 1e-23
 Identities = 63/171 (36%), Positives = 88/171 (51%), Gaps = 1/171 (0%)
 Frame = +3

Query: 135 CSQCGTNDSMLWRSAENGQI-CNDCHFSTVTPKESKLDSSIKTDCEDIKEDKDNGKNEES 311
           C  C  N+S++WR   NG+I CN CH   V       ++S +T  +  KE +      ++
Sbjct: 9   CFACKINESLMWRKGANGEILCNCCHLKRV-------NASTRTQRQSSKESRKLVARIKA 61

Query: 312 TPAKATGKGTRKSTRSTRYXXXXXXXXXXXXXXXRGRGRRSLFKRQPLKAPXXXXXXXXS 491
           +  K    G  KS   TR                + R   +  KR+P K+P        S
Sbjct: 62  SSRKGHHNG--KSGDKTR---------------EKNRRTLAKLKRKPYKSPTGVATVVAS 104

Query: 492 DSVFYQGMYMQVGDIVSMTDIDGGTYYAQIRGFLTDEYCEKSAAVTWLLPT 644
           + V+Y+ +  QVGD++S+ DIDGG YYAQIRGFL DEY  KSA +TWL+PT
Sbjct: 105 NKVYYKNILYQVGDVISIEDIDGGLYYAQIRGFLQDEYAVKSAVITWLVPT 155


>SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)
          Length = 297

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 135 CSQCGTNDSMLWRSAENG-QICNDC 206
           C+ CG   + LWR AE+G  +CN C
Sbjct: 223 CASCGVAKTPLWRDAEDGTPLCNAC 247


>SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)
          Length = 679

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
 Frame = +3

Query: 135 CSQCGTNDSMLWRSA--ENGQICNDC----HFSTVT----PKESKL---DSSIKTDCEDI 275
           C  CGT+ ++  +S    NG  C++C    H++ V     P+  KL   ++S   D E +
Sbjct: 226 CGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWAKVCRSTKPQGEKLSLNNTSATDDYEPV 285

Query: 276 KEDKDNGKNEESTPAKATGKGTRKST 353
            E   NG    + P  +T     KST
Sbjct: 286 AEPAPNGNQPPTEPRTSTPGTPAKST 311


>SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)
          Length = 563

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 135 CSQCGTNDSMLWRSAENGQ-ICNDC 206
           C+ C T  + LWR  +NG  +CN C
Sbjct: 412 CANCHTTQTTLWRRNQNGDPVCNAC 436


>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1498

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
 Frame = +3

Query: 114 NIMPKPICSQCGTNDSMLWRSAENGQICNDCHFSTVTPKESKLDSS---IKTDCEDIKED 284
           N   K  CS    N  ML  + E    C+DC  +   P++ +  S       D      +
Sbjct: 566 NTCDKRFCSAVNLNRHMLCHNQERPYACDDCDRAFKRPRDLETHSKAHHANVDKMTHSAN 625

Query: 285 KDNGKNEESTPAKATGKGTRKS 350
           +D  ++    PA +  K  RK+
Sbjct: 626 EDTPRSNAEIPAPSPAKKPRKA 647


>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 258  TDCEDIKED-KDNGKNEESTPAKATGKGTRKSTRSTR 365
            T+ ED +   ++    EE  P +ATGK + K TRSTR
Sbjct: 1357 TEVEDAQTAIEEEAPVEEVQPKRATGKASAKPTRSTR 1393


>SB_38912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 279 EDKDNGKNEESTPAKATGKGTRKSTRST 362
           ED+D  ++ ESTP  + GK  R  +RS+
Sbjct: 67  EDQDTERDSESTPPSSGGKERRTKSRSS 94


>SB_50607| Best HMM Match : Vicilin_N (HMM E-Value=0.88)
          Length = 385

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = +3

Query: 165 LWRSAENGQICNDCHFSTVTPKESKLDSSIKTDCEDIKEDKDN---GKNEESTPAKAT 329
           LW++   G        ST +P E   +   + D ED  ED+DN   G ++E      T
Sbjct: 276 LWKATAAGNSKEKDDLSTSSPAEEIEEKDYEPDGEDEDEDEDNEGCGNDDEDNDIDVT 333


>SB_5137| Best HMM Match : Phage_integrase (HMM E-Value=0.11)
          Length = 834

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = +3

Query: 165 LWRSAENGQICNDCHFSTVTPKESKLDSSIKTDCEDIKEDKDN---GKNEESTPAKAT 329
           LW++   G        ST +P E   +   + D ED  ED+DN   G ++E      T
Sbjct: 282 LWKATAAGNSKEKDDLSTSSPAEEIEEKDYEPDGEDEDEDEDNEGCGNDDEDNDIDVT 339


>SB_42921| Best HMM Match : Chordopox_A13L (HMM E-Value=9.6)
          Length = 102

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 86  IYLFKLKKYKHNAKTDLQSMRNQRFYVMAKRRKRTN 193
           +YL+KL +Y HN + D+ +  N  F +  +R K T+
Sbjct: 42  VYLYKLYRYFHNPEADVNA--NPSFVLKIQRYKLTS 75


>SB_25237| Best HMM Match : Phage_integrase (HMM E-Value=0.2)
          Length = 845

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = +3

Query: 165 LWRSAENGQICNDCHFSTVTPKESKLDSSIKTDCEDIKEDKDN---GKNEESTPAKAT 329
           LW++   G        ST +P E   +   + D ED  ED+DN   G ++E      T
Sbjct: 282 LWKATAAGNSKEKDDLSTSSPAEEIEEKDYEPDGEDEDEDEDNEGCGNDDEDNDIDVT 339


>SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 150 TNDSMLWRSAENGQICNDCHFSTVTPKESKLDSSIKTD-CEDIKEDK 287
           T+DS +WR    G I +D  F   T  ES+L  S   D C  + +++
Sbjct: 93  TDDSFVWRGQGRGSIADDDDF---TDNESQLSGSALVDSCLKVLQER 136


>SB_54413| Best HMM Match : Disintegrin (HMM E-Value=3.2)
          Length = 98

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 237 KLDSSIKTDCEDIKEDKDNGKNEEST 314
           K + SIKT  +  K DK+N  NEEST
Sbjct: 47  KYNRSIKTVDKRYKTDKNNKNNEEST 72


>SB_51594| Best HMM Match : p450 (HMM E-Value=3.5e-35)
          Length = 1208

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 225 PKESKLDSSIKTDCEDIKEDKDNGKNEESTPAKATGKGTRKSTRS 359
           P   K   +  + C+D  EDK + K E+  P K       KS R+
Sbjct: 274 PSSRKCVITDSSSCDDPYEDKQSVKREKDLPVKKAPTARPKSRRA 318


>SB_34029| Best HMM Match : fn1 (HMM E-Value=2.4)
          Length = 182

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 105 KNTNIMPKPICSQCGTNDSMLWRSAENGQI 194
           KN   MPK  CS CG   S    + E G++
Sbjct: 25  KNGRTMPKCTCSSCGITKSEFVSAKEGGKL 54


>SB_50781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 237 KLDSSIKTDCEDIKEDKDNGKNEEST 314
           K + SIKT  +  K DK+N  NEEST
Sbjct: 4   KYNRSIKTVDKRYKTDKNNKNNEEST 29


>SB_41783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 237 KLDSSIKTDCEDIKEDKDNGKNEEST 314
           K + SIKT  +  K DK+N  NEEST
Sbjct: 4   KYNRSIKTVDKRYKTDKNNKNNEEST 29


>SB_4755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 105 KNTNIMPKPICSQCGTNDSMLWRSAENGQI 194
           KN   MPK  CS CG   S    + E G++
Sbjct: 25  KNGRTMPKCTCSSCGITKSEFVSAKEGGKL 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,138,821
Number of Sequences: 59808
Number of extensions: 365618
Number of successful extensions: 1246
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)