Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12b20f
(656 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC031091-1|AAH31091.1| 269|Homo sapiens GATAD1 protein protein. 108 2e-23
BC019350-1|AAH19350.1| 269|Homo sapiens GATA zinc finger domain... 107 3e-23
AK026142-1|BAB15374.1| 269|Homo sapiens protein ( Homo sapiens ... 107 3e-23
AC000064-2|AAB46345.1| 140|Homo sapiens WUGSC:H_RG083M05.2 prot... 76 1e-13
L34357-1|AAA58496.1| 442|Homo sapiens GATA-4 protein. 30 8.3
D78260-1|BAA11334.1| 439|Homo sapiens GATA-4 transcription fact... 30 8.3
BC105108-1|AAI05109.1| 442|Homo sapiens GATA binding protein 4 ... 30 8.3
BC101580-1|AAI01581.1| 442|Homo sapiens GATA binding protein 4 ... 30 8.3
AY740706-1|AAW51922.1| 442|Homo sapiens GATA binding protein 4 ... 30 8.3
>BC031091-1|AAH31091.1| 269|Homo sapiens GATAD1 protein protein.
Length = 269
Score = 108 bits (259), Expect = 2e-23
Identities = 64/190 (33%), Positives = 92/190 (48%), Gaps = 17/190 (8%)
Frame = +3
Query: 126 KPICSQCGTNDSMLWRSAENGQICNDCHFSTVTPKESKLDSSIKTDCEDIKEDKDNG--- 296
KP CS C T S +W+ G+I CH T + + G
Sbjct: 6 KPTCSVCKTTSSSMWKKGAQGEIL--CHHCT--GRGGAGSGGAGSGAAGGTGSSGGGGFG 61
Query: 297 ----KNEESTPAKATGKGTRKSTRST--------RYXXXXXXXXXXXXXXXRGRGRRSLF 440
+ +TP ++ G G K ++ R +G+GRR +F
Sbjct: 62 AATFASTSATPPQSNGGGGGKQSKQEIHRRSARLRNTKYKSAPAAEKKVSTKGKGRRHIF 121
Query: 441 K-RQPLKAPXXXXXXXXSDSVFYQGMYMQVGDIVSMTDI-DGGTYYAQIRGFLTDEYCEK 614
K + P+KAP ++S+FY+G+Y Q+GD+VS+ D DG YYAQIRGF+ D+YCEK
Sbjct: 122 KLKNPIKAPESVSTIITAESIFYKGVYYQIGDVVSVIDEQDGKPYYAQIRGFIQDQYCEK 181
Query: 615 SAAVTWLLPT 644
SAA+TWL+PT
Sbjct: 182 SAALTWLIPT 191
>BC019350-1|AAH19350.1| 269|Homo sapiens GATA zinc finger domain
containing 1 protein.
Length = 269
Score = 107 bits (258), Expect = 3e-23
Identities = 64/190 (33%), Positives = 92/190 (48%), Gaps = 17/190 (8%)
Frame = +3
Query: 126 KPICSQCGTNDSMLWRSAENGQICNDCHFSTVTPKESKLDSSIKTDCEDIKEDKDNG--- 296
KP CS C T S +W+ G+I CH T + + G
Sbjct: 6 KPTCSVCKTTSSSMWKKGAQGEIL--CHHCT--GRGGAGSGGAGSGAAGGTGGSGGGGFG 61
Query: 297 ----KNEESTPAKATGKGTRKSTRST--------RYXXXXXXXXXXXXXXXRGRGRRSLF 440
+ +TP ++ G G K ++ R +G+GRR +F
Sbjct: 62 AATFASTSATPPQSNGGGGGKQSKQEIHRRSARLRNTKYKSAPAAEKKVSTKGKGRRHIF 121
Query: 441 K-RQPLKAPXXXXXXXXSDSVFYQGMYMQVGDIVSMTDI-DGGTYYAQIRGFLTDEYCEK 614
K + P+KAP ++S+FY+G+Y Q+GD+VS+ D DG YYAQIRGF+ D+YCEK
Sbjct: 122 KLKNPIKAPESVSTIITAESIFYKGVYYQIGDVVSVIDEQDGKPYYAQIRGFIQDQYCEK 181
Query: 615 SAAVTWLLPT 644
SAA+TWL+PT
Sbjct: 182 SAALTWLIPT 191
>AK026142-1|BAB15374.1| 269|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22489 fis, clone HRC10951. ).
Length = 269
Score = 107 bits (258), Expect = 3e-23
Identities = 64/190 (33%), Positives = 92/190 (48%), Gaps = 17/190 (8%)
Frame = +3
Query: 126 KPICSQCGTNDSMLWRSAENGQICNDCHFSTVTPKESKLDSSIKTDCEDIKEDKDNG--- 296
KP CS C T S +W+ G+I CH T + + G
Sbjct: 6 KPTCSVCKTTSSSMWKKGAQGEIL--CHHCT--GRGGAGSGGAGSGAAGGTGGSGGGGFG 61
Query: 297 ----KNEESTPAKATGKGTRKSTRST--------RYXXXXXXXXXXXXXXXRGRGRRSLF 440
+ +TP ++ G G K ++ R +G+GRR +F
Sbjct: 62 AATFASTSATPPQSNGGGGGKQSKQEIHRRSARLRNTKYKSAPAAEKKVSTKGKGRRHIF 121
Query: 441 K-RQPLKAPXXXXXXXXSDSVFYQGMYMQVGDIVSMTDI-DGGTYYAQIRGFLTDEYCEK 614
K + P+KAP ++S+FY+G+Y Q+GD+VS+ D DG YYAQIRGF+ D+YCEK
Sbjct: 122 KLKNPIKAPESVSTIITAESIFYKGVYYQIGDVVSVIDEQDGKPYYAQIRGFIQDQYCEK 181
Query: 615 SAAVTWLLPT 644
SAA+TWL+PT
Sbjct: 182 SAALTWLIPT 191
>AC000064-2|AAB46345.1| 140|Homo sapiens WUGSC:H_RG083M05.2
protein.
Length = 140
Score = 76.2 bits (179), Expect = 1e-13
Identities = 33/49 (67%), Positives = 41/49 (83%), Gaps = 1/49 (2%)
Frame = +3
Query: 501 FYQGMYMQVGDIVSMTDI-DGGTYYAQIRGFLTDEYCEKSAAVTWLLPT 644
F QG+Y Q+GD+VS+ D DG YYAQIRGF+ D+YCEKSAA+TWL+PT
Sbjct: 14 FPQGVYYQIGDVVSVIDEQDGKPYYAQIRGFIQDQYCEKSAALTWLIPT 62
>L34357-1|AAA58496.1| 442|Homo sapiens GATA-4 protein.
Length = 442
Score = 29.9 bits (64), Expect = 8.3
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 135 CSQCGTNDSMLW-RSAENGQICNDCHFSTVTPKESKLDSSIKTDCEDIKEDKDNGKNEES 311
C+ C T + LW R+AE +CN C + +++ + ++ K N+
Sbjct: 271 CANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPR-PLAMRKEGIQTRKRKPKNLNKSK 329
Query: 312 TPAKATG 332
TPA +G
Sbjct: 330 TPAAPSG 336
>D78260-1|BAA11334.1| 439|Homo sapiens GATA-4 transcription factor
protein.
Length = 439
Score = 29.9 bits (64), Expect = 8.3
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 135 CSQCGTNDSMLW-RSAENGQICNDCHFSTVTPKESKLDSSIKTDCEDIKEDKDNGKNEES 311
C+ C T + LW R+AE +CN C + +++ + ++ K N+
Sbjct: 268 CANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPR-PLAMRKEGIQTRKRKPKNLNKSK 326
Query: 312 TPAKATG 332
TPA +G
Sbjct: 327 TPAAPSG 333
>BC105108-1|AAI05109.1| 442|Homo sapiens GATA binding protein 4
protein.
Length = 442
Score = 29.9 bits (64), Expect = 8.3
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 135 CSQCGTNDSMLW-RSAENGQICNDCHFSTVTPKESKLDSSIKTDCEDIKEDKDNGKNEES 311
C+ C T + LW R+AE +CN C + +++ + ++ K N+
Sbjct: 271 CANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPR-PLAMRKEGIQTRKRKPKNLNKSK 329
Query: 312 TPAKATG 332
TPA +G
Sbjct: 330 TPAAPSG 336
>BC101580-1|AAI01581.1| 442|Homo sapiens GATA binding protein 4
protein.
Length = 442
Score = 29.9 bits (64), Expect = 8.3
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 135 CSQCGTNDSMLW-RSAENGQICNDCHFSTVTPKESKLDSSIKTDCEDIKEDKDNGKNEES 311
C+ C T + LW R+AE +CN C + +++ + ++ K N+
Sbjct: 271 CANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPR-PLAMRKEGIQTRKRKPKNLNKSK 329
Query: 312 TPAKATG 332
TPA +G
Sbjct: 330 TPAAPSG 336
>AY740706-1|AAW51922.1| 442|Homo sapiens GATA binding protein 4
protein.
Length = 442
Score = 29.9 bits (64), Expect = 8.3
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 135 CSQCGTNDSMLW-RSAENGQICNDCHFSTVTPKESKLDSSIKTDCEDIKEDKDNGKNEES 311
C+ C T + LW R+AE +CN C + +++ + ++ K N+
Sbjct: 271 CANCQTTTTALWRRNAEGEPVCNACGLYMKLHGVPR-PLAMRKEGIQTRKRKPKNLNKSK 329
Query: 312 TPAKATG 332
TPA +G
Sbjct: 330 TPAAPSG 336
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,877,087
Number of Sequences: 237096
Number of extensions: 1579838
Number of successful extensions: 5468
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5464
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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