Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b19r
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    28   1.8  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    28   1.8  
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po...    27   3.1  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    26   7.2  

>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 242 NINTTFFQQYKSIQTDHNVMAAPWNPMQHLK*VLTEDN 355
           +I+ TF + YK   T+H  + + + P Q +  +L E N
Sbjct: 222 SISNTFIEPYKENNTEHLHLKSAFEPCQMMPGMLLEQN 259


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 764 ASPSLN--FESIYEMRKVVEVRAICDIFIRCK 675
           ASP+    ++S+Y  RK+ E+    DIFI CK
Sbjct: 205 ASPNSKKKYKSLYCWRKIFEIYMDSDIFISCK 236


>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 180 FHSSSNQRTTQDYSLASLHLTISTPHSFSNIKVFKLITMLWQLHGTP 320
           F SSS+  +   ++L  L +T+           F ++ ++WQL+  P
Sbjct: 113 FRSSSSSSSNYRHNLDFLEITVFAVVPVGIASFFTMVMLIWQLYKYP 159


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 534 SIYDVSYNLFTSIRSVRRTILREFYSYFTYPKYYNYVMIEI 656
           + +++ +NL T +RS   +   E   YFT    +N  M E+
Sbjct: 599 NFWNLKFNLLTMLRSFHGSFTDETNGYFTLLNDFNASMEEL 639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,094,933
Number of Sequences: 5004
Number of extensions: 62241
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)