Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b19r
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1188 + 10219546-10219664,10220855-10223660                       29   4.3  
02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610...    29   4.3  
02_04_0555 - 23840634-23841035,23841388-23841501,23841742-238418...    29   5.7  

>06_01_1188 + 10219546-10219664,10220855-10223660
          Length = 974

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 469 KLLKEFNENLCKRLQFLIDLLIK-ISRTKYNMMIIMCWQV 353
           KLLKEF+E L  ++Q L D L++ +   +Y +++   W +
Sbjct: 251 KLLKEFSEKLLVQVQHLADHLVEGLKEKRYFVVLDDLWTI 290


>02_05_0490 +
           29456825-29457499,29458771-29459057,29460922-29461039,
           29461451-29461972,29462058-29462170,29463033-29463053,
           29463726-29463960,29464218-29464381,29464695-29464776,
           29465077-29465166,29465625-29465858,29466347-29466418,
           29466857-29467000,29467573-29467659,29467940-29468098,
           29469216-29469476,29469789-29469836
          Length = 1103

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 661 REYLHLHLIKMSHIARTSTTFLIS*IDSKFKDGDAXXXXXSVK 789
           ++ +HLHL K     R S+   +  I SK+K+GD       +K
Sbjct: 617 KKTIHLHLKKFFSGTRFSSPSFLKCISSKYKEGDLAYVSGKIK 659


>02_04_0555 -
           23840634-23841035,23841388-23841501,23841742-23841844,
           23842415-23842467,23842544-23842644,23842702-23842879,
           23842998-23843120,23843515-23843656,23843854-23843959,
           23844236-23844305,23844430-23844588,23845229-23845329,
           23845410-23845503
          Length = 581

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 684 YKNVTYRPHFNYLSHFID 737
           YKN+ YRP +  ++HF D
Sbjct: 338 YKNIVYRPQYQMVTHFPD 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,436,444
Number of Sequences: 37544
Number of extensions: 311356
Number of successful extensions: 548
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)