Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b19r
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   4.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.6  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = +2

Query: 164 QLICTFSFLVQSTNYAGLQSSKSTLNNINTTFFQQYKSIQTDHN 295
           ++I + S   + +NY    ++ +  NN N  +   YK +  + N
Sbjct: 313 KIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNIN 356


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 618 TYPKYYNYVMIEINARIFTLAPYKNVTYRPHFNYL 722
           T+ K   +  + +N+ +FT A    V YRP   Y+
Sbjct: 123 TFYKTAAWARLRMNSGMFTTAFSIAVLYRPDTKYM 157


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 618 TYPKYYNYVMIEINARIFTLAPYKNVTYRPHFNYL 722
           T+ K   +  + +N+ +FT A    V YRP   Y+
Sbjct: 123 TFYKTAAWARLRMNSGMFTTAFSIAVLYRPDTKYM 157


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +3

Query: 645 MIEINARIFTLAPYKNVTYRPHFNYLSHFIDRFE 746
           MIE N  +      KNVT   H      F+  +E
Sbjct: 341 MIEANVAVLHSFQMKNVTIVDHHTASESFMKHYE 374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,819
Number of Sequences: 438
Number of extensions: 4908
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)