Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12b19f
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0190 - 17708513-17708548,17708897-17709295 29 3.7
04_04_1500 + 34010819-34011016,34013267-34013308,34014195-340142... 29 3.7
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 28 5.0
09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121 28 6.5
08_02_0854 - 21905054-21906308,21906396-21907300 28 6.5
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 28 6.5
01_06_1094 - 34478538-34478624,34478860-34478931,34479154-344792... 28 6.5
01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990 28 6.5
07_03_0455 + 18374327-18374533,18375136-18375482,18375959-183761... 27 8.7
04_04_1028 + 30230224-30231274,30231500-30231609,30232144-302321... 27 8.7
03_02_0850 + 11775232-11776077,11776761-11777321 27 8.7
>06_03_0190 - 17708513-17708548,17708897-17709295
Length = 144
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 260 RVVHLLVLNIIIAVSTYQAIKMVKKVSEESVDSG-VGRCSSQSGSERESDETPRG 421
+VVH II +Q + S E D+G VGR ++G R+S P G
Sbjct: 81 KVVHRGTSECIIETGAWQRDGQRLEASAEGGDAGTVGRGRQRAGERRQSPSMPEG 135
>04_04_1500 +
34010819-34011016,34013267-34013308,34014195-34014204,
34014526-34014586,34014621-34014678,34015266-34015412,
34015643-34016205,34018942-34019728
Length = 621
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = -3
Query: 228 PYRREIGTALKDEGKKKTPKIIREINEKSTTV 133
P++ +I +DEG + +PK+IR++ + + TV
Sbjct: 41 PFQHDILGNKEDEGVESSPKVIRQLPDSNFTV 72
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 326 VKKVSEESVDSGVGRCSSQSGSERESDETPRGAEQSAPVDIPDS 457
V+ VSEE + GV S +SG+ E D+ E+ P + S
Sbjct: 56 VESVSEEGEEEGVEEDSEESGAAGEDDDGEDNDEKPRPEPVAAS 99
>09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121
Length = 798
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = -3
Query: 261 LQKPLSNLWRSPYRREIGTALKDEGKKKTPKIIREINEKSTTVEKDVRKLCRKVINKH 88
LQ N W R I K E K PK+ +E+NE+ T+ + KV NKH
Sbjct: 551 LQDMRENGWEPLLNRVISFCNKHE--IKVPKMDKEVNERGTSTRRR-----HKVTNKH 601
>08_02_0854 - 21905054-21906308,21906396-21907300
Length = 719
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = -3
Query: 261 LQKPLSNLWRSPYRREIGTALKDEGKKKTPKIIREINEKSTTVEKDVRKLCRKVINKH 88
LQ N W R I K E K PK+ +E+NE+ T+ + KV NKH
Sbjct: 551 LQDMRENGWEPLLNRVISFCNKHE--IKVPKMDKEVNERETSTHRR-----HKVTNKH 601
>05_07_0079 -
27539389-27539892,27540059-27540343,27540453-27540550,
27540951-27541042,27541155-27541259,27541360-27541567,
27542469-27542472,27542742-27542765,27545025-27546266
Length = 853
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 216 EIGTALKDEGKKKTPKIIREINEKSTTVE 130
E G ALK GKKK K ++ + E++ E
Sbjct: 279 EAGAALKGVGKKKAKKALKHVEEENAGEE 307
>01_06_1094 -
34478538-34478624,34478860-34478931,34479154-34479222,
34479312-34479422,34480390-34480528,34480590-34480705,
34480821-34480968,34481058-34481215,34481654-34481827,
34482592-34483056
Length = 512
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +1
Query: 82 LRVFVYYLPAQFTYILL 132
LRV+VY +P++FTY LL
Sbjct: 113 LRVYVYEMPSRFTYDLL 129
>01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990
Length = 798
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = -3
Query: 261 LQKPLSNLWRSPYRREIGTALKDEGKKKTPKIIREINEKSTTVEKDVRKLCRKVINKH 88
LQ N W R I K E K PK+ +E+NE+ T+ + KV NKH
Sbjct: 551 LQDMRENGWEPLLNRVISFCNKHE--IKVPKMDKEVNERGTSTHRR-----HKVTNKH 601
>07_03_0455 +
18374327-18374533,18375136-18375482,18375959-18376193,
18376629-18376724,18377392-18377463,18377596-18377700
Length = 353
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = -2
Query: 535 SNNGASRTLLPATLPARLFLASLHVLAVGDVDRRGLLGAPWSLI*LAFTPRLAATATHTA 356
S++G+S + T+P + F+ H VG + LL A W + TP L +++++
Sbjct: 60 SSSGSSSSKAKFTVPQKYFM---HFYVVGVLATTILLLAIWFYAYMKLTPLLLESSSYST 116
Query: 355 IYT 347
I++
Sbjct: 117 IFS 119
>04_04_1028 +
30230224-30231274,30231500-30231609,30232144-30232170,
30233107-30234252
Length = 777
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 280 FKYHYRCINVSSNQDGQEGIGRECR*RCG 366
FK YRC N SS D G G CR + G
Sbjct: 307 FKTQYRCNNESSCMDRFMGEGYVCRCKAG 335
>03_02_0850 + 11775232-11776077,11776761-11777321
Length = 468
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 82 LRVFVYYLPAQFTYILLD 135
LRVF+Y LPA+F + LLD
Sbjct: 70 LRVFMYDLPAEFHFGLLD 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,662,558
Number of Sequences: 37544
Number of extensions: 257211
Number of successful extensions: 902
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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