Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b19f
         (602 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U76378-1|AAB18789.1| 1150|Drosophila melanogaster LK6 protein ki...    49   4e-06
AE014297-1372|AAF54694.1| 1142|Drosophila melanogaster CG17342-P...    49   4e-06
AE014297-1373|AAF54695.1| 1090|Drosophila melanogaster CG17342-P...    49   6e-06
DQ138908-1|ABA86514.1| 1412|Drosophila melanogaster CG11156 prot...    29   6.4  
AF257463-1|AAG27544.1| 1425|Drosophila melanogaster BRCT-domain ...    29   6.4  
AE014298-1949|AAF48306.1| 1425|Drosophila melanogaster CG11156-P...    29   6.4  

>U76378-1|AAB18789.1| 1150|Drosophila melanogaster LK6 protein
           kinase protein.
          Length = 1150

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
 Frame = +2

Query: 338 SEESVDSGVGRCSSQSGSERESDETPRGAEQSAPVDIP-DSEDMQXXXXXXXXXXXXXXX 514
           S+    + + R SS+  S  ES E P   E     ++    E+MQ               
Sbjct: 52  SQSDGQNELTRYSSEDVSGNESSEAPNMTEVERQAELNRHKEEMQKKRRKKRI------- 104

Query: 515 SGSSVVTSCFQDLYKLTGEVLGEGAYASV 601
             SS+ +S FQ+LYKLTGE+LGEGAYASV
Sbjct: 105 -SSSLHSSTFQELYKLTGEILGEGAYASV 132


>AE014297-1372|AAF54694.1| 1142|Drosophila melanogaster CG17342-PA,
           isoform A protein.
          Length = 1142

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
 Frame = +2

Query: 338 SEESVDSGVGRCSSQSGSERESDETPRGAEQSAPVDIP-DSEDMQXXXXXXXXXXXXXXX 514
           S+    + + R SS+  S  ES E P   E     ++    E+MQ               
Sbjct: 52  SQSDGQNELTRYSSEDVSGNESSEAPNMTEVERQAELNRHKEEMQKKRRKKRI------- 104

Query: 515 SGSSVVTSCFQDLYKLTGEVLGEGAYASV 601
             SS+ +S FQ+LYKLTGE+LGEGAYASV
Sbjct: 105 -SSSLHSSTFQELYKLTGEILGEGAYASV 132


>AE014297-1373|AAF54695.1| 1090|Drosophila melanogaster CG17342-PB,
           isoform B protein.
          Length = 1090

 Score = 48.8 bits (111), Expect = 6e-06
 Identities = 33/79 (41%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
 Frame = +2

Query: 368 RCSSQSGSERESDETPRGAEQSAPVDIP-DSEDMQXXXXXXXXXXXXXXXSGSSVVTSCF 544
           R SS+  S  ES E P   E     ++    E+MQ                 SS+ +S F
Sbjct: 10  RYSSEDVSGNESSEAPNMTEVERQAELNRHKEEMQKKRRKKRI--------SSSLHSSTF 61

Query: 545 QDLYKLTGEVLGEGAYASV 601
           Q+LYKLTGE+LGEGAYASV
Sbjct: 62  QELYKLTGEILGEGAYASV 80


>DQ138908-1|ABA86514.1| 1412|Drosophila melanogaster CG11156 protein.
          Length = 1412

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 276  SRCTTLQKPLSNLWRSPYRREIGTALK-DEGKKKTPKIIREINEKST-TVEKDVRKLCRK 103
            S CT L +  +  +   +  +    L  +EGK    +IIRE+ E  T  +E+  R+ C  
Sbjct: 878  SPCTPLSQVGAQQYNLDFLEQFVQRLDTEEGKDCVREIIREMRENQTPELERIRRQACTP 937

Query: 102  VINKH 88
            V  KH
Sbjct: 938  VSRKH 942


>AF257463-1|AAG27544.1| 1425|Drosophila melanogaster BRCT-domain
            protein MUS101 protein.
          Length = 1425

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 276  SRCTTLQKPLSNLWRSPYRREIGTALK-DEGKKKTPKIIREINEKST-TVEKDVRKLCRK 103
            S CT L +  +  +   +  +    L  +EGK    +IIRE+ E  T  +E+  R+ C  
Sbjct: 885  SPCTPLSQVGAQQYNLDFLEQFVQRLDTEEGKDCVREIIREMRENQTPELERIRRQACTP 944

Query: 102  VINKH 88
            V  KH
Sbjct: 945  VSRKH 949


>AE014298-1949|AAF48306.1| 1425|Drosophila melanogaster CG11156-PA
            protein.
          Length = 1425

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 276  SRCTTLQKPLSNLWRSPYRREIGTALK-DEGKKKTPKIIREINEKST-TVEKDVRKLCRK 103
            S CT L +  +  +   +  +    L  +EGK    +IIRE+ E  T  +E+  R+ C  
Sbjct: 885  SPCTPLSQVGAQQYNLDFLEQFVQRLDTEEGKDCVREIIREMRENQTPELERIRRQACTP 944

Query: 102  VINKH 88
            V  KH
Sbjct: 945  VSRKH 949


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,738,752
Number of Sequences: 53049
Number of extensions: 408539
Number of successful extensions: 1495
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2462276481
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)