Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12b19f
(602 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66564-5|CAC42300.2| 198|Caenorhabditis elegans Hypothetical pr... 31 0.48
Z66564-2|CAA91474.1| 248|Caenorhabditis elegans Hypothetical pr... 31 0.48
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 31 0.63
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 31 0.63
Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical pr... 31 0.63
Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical pr... 31 0.63
Z50795-6|CAD59152.2| 707|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z50795-5|CAA90665.2| 705|Caenorhabditis elegans Hypothetical pr... 30 1.1
AL032635-1|CAA21600.1| 382|Caenorhabditis elegans Hypothetical ... 29 3.4
AC006808-4|AAF60815.3| 397|Caenorhabditis elegans Hypothetical ... 29 3.4
AC006808-3|AAT68889.1| 433|Caenorhabditis elegans Hypothetical ... 29 3.4
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr... 28 5.9
L16621-10|AAA28227.1| 507|Caenorhabditis elegans Temporarily as... 28 5.9
L16621-9|AAL11487.1| 568|Caenorhabditis elegans Temporarily ass... 28 5.9
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical... 28 5.9
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom... 28 5.9
AC006695-17|AAF39983.2| 327|Caenorhabditis elegans Hypothetical... 28 5.9
Z80214-1|CAB02262.1| 500|Caenorhabditis elegans Hypothetical pr... 27 7.8
AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related... 27 7.8
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical... 27 7.8
AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related... 27 7.8
>Z66564-5|CAC42300.2| 198|Caenorhabditis elegans Hypothetical
protein F52D10.3b protein.
Length = 198
Score = 31.5 bits (68), Expect = 0.48
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -3
Query: 234 RSPYRREIGTALKDEGKKKTPKIIREINEKSTTVEKDVRKLCRKVIN 94
RS +R K EG +K ++ +E EK VEK++R +C+ V+N
Sbjct: 58 RSSWRVISSIEQKTEGSEKKQQMAKEYREK---VEKELRDICQDVLN 101
>Z66564-2|CAA91474.1| 248|Caenorhabditis elegans Hypothetical
protein F52D10.3a protein.
Length = 248
Score = 31.5 bits (68), Expect = 0.48
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -3
Query: 234 RSPYRREIGTALKDEGKKKTPKIIREINEKSTTVEKDVRKLCRKVIN 94
RS +R K EG +K ++ +E EK VEK++R +C+ V+N
Sbjct: 58 RSSWRVISSIEQKTEGSEKKQQMAKEYREK---VEKELRDICQDVLN 101
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 31.1 bits (67), Expect = 0.63
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 219 REIGTALKDEGKKKTPKIIREINEKSTTVEKDVRKLCRKVINKHS 85
REI +++E P+I REI E S + K C+K + HS
Sbjct: 1744 REIKREVEEEAAPVAPEIKREIVEPSQSQNSSQCKNCQKALESHS 1788
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 31.1 bits (67), Expect = 0.63
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 219 REIGTALKDEGKKKTPKIIREINEKSTTVEKDVRKLCRKVINKHS 85
REI +++E P+I REI E S + K C+K + HS
Sbjct: 1744 REIKREVEEEAAPVAPEIKREIVEPSQSQNSSQCKNCQKALESHS 1788
>Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical protein
C09G5.8 protein.
Length = 1531
Score = 31.1 bits (67), Expect = 0.63
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 353 DSGVGRCS-SQSGSERESDETPRGAEQSAPVDIPDSE 460
D+ V CS S S SE S +PR AE+ APV +PD E
Sbjct: 1327 DTNVITCSKSNSTSESSSTSSPRRAEK-APVPLPDYE 1362
>Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical protein
C09G5.8 protein.
Length = 1531
Score = 31.1 bits (67), Expect = 0.63
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 353 DSGVGRCS-SQSGSERESDETPRGAEQSAPVDIPDSE 460
D+ V CS S S SE S +PR AE+ APV +PD E
Sbjct: 1327 DTNVITCSKSNSTSESSSTSSPRRAEK-APVPLPDYE 1362
>Z50795-6|CAD59152.2| 707|Caenorhabditis elegans Hypothetical
protein R166.5b protein.
Length = 707
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = +2
Query: 542 FQDLYKLTGEVLGEGAYASV 601
F D YKLT E LG GAY SV
Sbjct: 198 FFDYYKLTDEHLGSGAYGSV 217
>Z50795-5|CAA90665.2| 705|Caenorhabditis elegans Hypothetical
protein R166.5a protein.
Length = 705
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = +2
Query: 542 FQDLYKLTGEVLGEGAYASV 601
F D YKLT E LG GAY SV
Sbjct: 196 FFDYYKLTDEHLGSGAYGSV 215
>AL032635-1|CAA21600.1| 382|Caenorhabditis elegans Hypothetical
protein Y51A2A.1 protein.
Length = 382
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 447 MSTGADCSAPLGVSSDSRSLPDWLLQRP-TPLSTLSSDTFLT 325
M+T DC++ SS S +PDWL+ R T + +SD F +
Sbjct: 309 MNTPEDCASMNTASSRSWMVPDWLIYRKFTNSNHPNSDIFFS 350
>AC006808-4|AAF60815.3| 397|Caenorhabditis elegans Hypothetical
protein Y58G8A.4a protein.
Length = 397
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 266 VHLLVLNIIIAVSTYQAIKMVKKVSEESVDSGVGRCSSQSGSERESDETPR 418
V LL + +AV TY K+++KVS++ + C S + +R SD T R
Sbjct: 231 VMLLQFVVPMAVITYCYFKILQKVSKDMIIQNAQFCQSLTQKQR-SDATSR 280
>AC006808-3|AAT68889.1| 433|Caenorhabditis elegans Hypothetical
protein Y58G8A.4b protein.
Length = 433
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 266 VHLLVLNIIIAVSTYQAIKMVKKVSEESVDSGVGRCSSQSGSERESDETPR 418
V LL + +AV TY K+++KVS++ + C S + +R SD T R
Sbjct: 231 VMLLQFVVPMAVITYCYFKILQKVSKDMIIQNAQFCQSLTQKQR-SDATSR 280
>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical protein
Y37A1B.1a protein.
Length = 1222
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Frame = +2
Query: 320 KMVKKVSEESVDSGVGRCSSQSGSERESDETPRGAEQSA-------PVDIPDSED 463
K +K + D V S++ +E S E P AEQ+A P+ I +SED
Sbjct: 1157 KKDEKEKTDKKDDKVSEKSAEKSTEEPSQEVPASAEQAAEPSTEAEPIVIDESED 1211
>L16621-10|AAA28227.1| 507|Caenorhabditis elegans Temporarily
assigned gene nameprotein 282, isoform a protein.
Length = 507
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 309 YVDTAIMIFKTSRCTTLQKPLSNLWRSPYRREIGTALKDEGKKKTP 172
++ AI+I T T L+ P++ S + + IG +EG K P
Sbjct: 4 FISLAILIATTHCLTLLRDPVTQNGASKFEKSIGKYKYEEGYLKAP 49
>L16621-9|AAL11487.1| 568|Caenorhabditis elegans Temporarily
assigned gene nameprotein 282, isoform b protein.
Length = 568
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 309 YVDTAIMIFKTSRCTTLQKPLSNLWRSPYRREIGTALKDEGKKKTP 172
++ AI+I T T L+ P++ S + + IG +EG K P
Sbjct: 65 FISLAILIATTHCLTLLRDPVTQNGASKFEKSIGKYKYEEGYLKAP 110
>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Frame = +2
Query: 320 KMVKKVSEESVDSGVGRCSSQSGSERESDETPRGAEQSA-------PVDIPDSED 463
K +K + D V S++ +E S E P AEQ+A P+ I +SED
Sbjct: 1157 KKDEKEKTDKKDDKVSEKSAEKSTEEPSQEVPASAEQAAEPSTEAEPIVIDESED 1211
>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
homolog) family protein 6 protein.
Length = 1186
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -3
Query: 180 KTPKIIREINEKSTTVEKDVRK-LCRKVIN 94
+TP+++ E N+K+ T EK VR+ +CR N
Sbjct: 331 ETPQMLEERNQKTKTKEKVVRREVCRVTSN 360
>AC006695-17|AAF39983.2| 327|Caenorhabditis elegans Hypothetical
protein W06H8.6 protein.
Length = 327
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 338 SEESVDSGVGRCSSQSGSERESDETPR 418
S ESV+S CSS+S +ERE++ R
Sbjct: 71 SAESVNSIKSSCSSRSSAERETERAQR 97
>Z80214-1|CAB02262.1| 500|Caenorhabditis elegans Hypothetical
protein C27D8.2 protein.
Length = 500
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 314 AIKMVKKVSEESVDSGVGRCSSQSGSERESDE 409
AIK+ K SE+++ S + +S+SGS + E
Sbjct: 462 AIKLSKSQSEQNISSSKSKSASRSGSRSKRSE 493
>AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related
helicase protein.
Length = 1037
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -3
Query: 261 LQKPLSNLWRSPYRREIGTALKDEGKKKTPKIIREINEKSTTVEKDV-RKLCRKVINK 91
+ + +S + SP E + +E K P+I+RE +K+ +E+ + R + K+I K
Sbjct: 837 MSETISLIQNSP--AEFRKCVDEESNKIWPRILREDTDKAQKIEEQINRNIVYKIICK 892
>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
protein B0511.12 protein.
Length = 1634
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/82 (21%), Positives = 35/82 (42%)
Frame = -3
Query: 351 TLSSDTFLTILIA*YVDTAIMIFKTSRCTTLQKPLSNLWRSPYRREIGTALKDEGKKKTP 172
T + + + +A V + ++ + S L L ++ SP+R+ + + +DE P
Sbjct: 393 TSTQNPLFSTFVATSVAVSYLLSRMSSNQNLMVILFDIITSPFRKHLDSEQEDEDAANAP 452
Query: 171 KIIREINEKSTTVEKDVRKLCR 106
I +E V K V + R
Sbjct: 453 SISTARDEMPKMVRKTVGERAR 474
>AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related
helicase protein 1 protein.
Length = 1037
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -3
Query: 261 LQKPLSNLWRSPYRREIGTALKDEGKKKTPKIIREINEKSTTVEKDV-RKLCRKVINK 91
+ + +S + SP E + +E K P+I+RE +K+ +E+ + R + K+I K
Sbjct: 837 MSETISLIQNSP--AEFRKCVDEESNKIWPRILREDTDKAQKIEEQINRNIVYKIICK 892
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,042,403
Number of Sequences: 27780
Number of extensions: 210563
Number of successful extensions: 844
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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