Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b18r
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   6.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 54  RINFSSWVHA 83
           RINF SWVH+
Sbjct: 184 RINFGSWVHS 193


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 188 KNGILRLAIWSYG 226
           +NG+L L +W YG
Sbjct: 154 RNGLLPLLVWIYG 166


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 188 KNGILRLAIWSYG 226
           +NG+L L +W YG
Sbjct: 154 RNGLLPLLVWIYG 166


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 252 YFIHVKLVPRYYSRR 296
           YF+H +L+ RY+  R
Sbjct: 262 YFLHKQLMTRYFLER 276


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 252 YFIHVKLVPRYYSRR 296
           YF+H +L+ RY+  R
Sbjct: 262 YFLHKQLMTRYFLER 276


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 339 ESGETYYSRLYNMDVGDCNNEEPTSHE 259
           E G+ YY+  ++ D+G   N +  +H+
Sbjct: 784 EKGKEYYAASFHTDIG---NSQSLAHQ 807


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,903
Number of Sequences: 438
Number of extensions: 3212
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)