Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b18f
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    27   2.0  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   2.7  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    26   4.7  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    26   4.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   4.7  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    25   6.2  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   8.3  

>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 11  PLVGWLYPFMVKEVLGYDITVHESYNLERPEDYTNQA-DYIVRFEERK 151
           PL+GW+      + LG D  V+     E  E+Y ++  + ++R E  K
Sbjct: 135 PLIGWISAIEAHKELGIDFPVNLLMCFEGMEEYGSEGLEDLIRAEAEK 182


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 382 DYPNLEEWNTSISNLVVWY*VYIYPQYILFM*SWFLVITVADVHVVQS 239
           DY  L  +   +S L+     Y  P Y+ F+ S   VIT + VH +Q+
Sbjct: 685 DY-ELVSYKNELSELMYVTSSYSQPAYMEFLESLLAVITSSSVHPIQT 731


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +2

Query: 92  ERPEDYTNQADYIVRFEERKTRTKQSKLDRLRITQMQIGDYESGETYYSRLYNMD 256
           E P ++  Q D++ +F    +  + S    LR+ +    DYE     + RL ++D
Sbjct: 171 EEPTEFDIQRDHVQQFMFGISNLEGSIQKLLRLEKALESDYEDVSIQFDRLASLD 225


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -1

Query: 275 RYYSRRRPC---CTVWNNMFRPIRSHQSAFE*SSVYLVYFVWSSS 150
           R+Y+ +R C      W+N    I +H SAF      L YF  SSS
Sbjct: 189 RFYTSKRKCFRSILSWHNETFNIWTHLSAFIVFFAVLAYFYPSSS 233


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = -1

Query: 545  NNYLIYLN*TVN---RFHRINFSSWVHAICFGA 456
            NN L++++ T+    RFHRI  +S +HA+  G+
Sbjct: 2829 NNTLVFVDETITHILRFHRILNNSGMHALLQGS 2861


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 323 SVHLSTVYFIHVKLV-PRYYSRRRPCCTVWNNMFRP 219
           SVHL   Y     ++ P+Y + R PC   + ++F P
Sbjct: 245 SVHLKYPYLQQCIVIHPKYEAFRSPCSFAYLSLFNP 280


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 242 LYNMDVGDCNNEEPT 286
           +Y+MDV +CN  +PT
Sbjct: 509 IYHMDVSNCNPSKPT 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,855
Number of Sequences: 5004
Number of extensions: 53169
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)