Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b18f
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0127 - 17508808-17509029,17509195-17509938,17510004-175102...    31   0.91 
12_02_1141 + 26415235-26415858                                         28   6.4  
04_04_1121 - 31041629-31041793,31041891-31042022,31042255-310424...    28   6.4  
04_01_0099 + 1029785-1030039,1030269-1030357,1030484-1030541,103...    28   6.4  
02_05_0263 - 27257150-27259213                                         28   6.4  
01_03_0271 + 14454681-14456949,14457222-14457476,14458800-144588...    28   6.4  

>03_04_0127 -
           17508808-17509029,17509195-17509938,17510004-17510242,
           17510334-17510436,17510666-17510770,17510838-17510906,
           17510998-17511402,17512048-17512156,17512240-17512295
          Length = 683

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +2

Query: 44  KEVLGYDITVHESYN-LERPEDYTNQADYIVRFEERKTRTKQSKLDRLRITQMQIGDYES 220
           K V  YD   HE  N +++  +  +Q+ +I+    RK   + ++  +      ++GD E 
Sbjct: 279 KAVTAYDQLKHERDNAVQQVNELRDQSTHIILDFSRKDMEQATEHFK---NAREVGDTEY 335

Query: 221 GETYYSRLYNMDV 259
           G TY   ++NM V
Sbjct: 336 GHTYKGMIHNMKV 348


>12_02_1141 + 26415235-26415858
          Length = 207

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 155 RTKQSKLDRLRITQMQIGDYESGETYYSRLYNMDVGDCN 271
           R ++    R  + ++   D E GETYY+R ++ D+ + N
Sbjct: 58  RGRRRAAHRAVLDRISERDPEMGETYYTRYHDQDLSEFN 96


>04_04_1121 -
           31041629-31041793,31041891-31042022,31042255-31042425,
           31042521-31042622,31042703-31042807,31043115-31043286,
           31043916-31043980,31044179-31044502,31044729-31044846,
           31044928-31045011,31045472-31045603,31045714-31046570,
           31046735-31046849,31047371-31047481,31047763-31047824
          Length = 904

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 137 FEERKTRTKQSKLDRLRITQMQIGDYESGETYYSR 241
           +EE+K   KQ KLD+ + +++  GD  +  ++Y R
Sbjct: 457 YEEKKMSLKQQKLDQRKASEIS-GDTRAWNSFYMR 490


>04_01_0099 +
           1029785-1030039,1030269-1030357,1030484-1030541,
           1030643-1030960,1031043-1031165,1031698-1031901,
           1031982-1032041
          Length = 368

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 176 LVYFVWSSSFSLRTERCNLLDLYNLRVALNYTTRERLCHI 57
           ++Y  W+S F L  E+   + L  +R +     R R CHI
Sbjct: 42  VLYSAWASPFELSMEKAASIALVVIRPSGRCLLRHRHCHI 81


>02_05_0263 - 27257150-27259213
          Length = 687

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 460 VLINSSVFTILSSGKYFISYHPFF*YDYPNLEEWNTSIS 344
           +  NS +      G+  +S   FF  +Y NL+ WN  IS
Sbjct: 472 ITANSLISAYAKCGRLDLSVGLFFSLEYRNLDTWNAIIS 510


>01_03_0271 +
           14454681-14456949,14457222-14457476,14458800-14458864,
           14459053-14459171,14459270-14459324
          Length = 920

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 460 VLINSSVFTILSSGKYFISYHPFF*YDYPNLEEWNTSIS 344
           +  NS +      GK  +S   FF   Y NL+ WN  IS
Sbjct: 589 ITANSLISAYAKCGKLDLSAGLFFSLKYRNLDTWNAMIS 627


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,119,884
Number of Sequences: 37544
Number of extensions: 290889
Number of successful extensions: 613
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)