Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b18f
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51943| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.014
SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)               30   1.2  
SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36)                 30   1.2  
SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)                    30   1.6  
SB_12498| Best HMM Match : TPR_1 (HMM E-Value=0)                       30   1.6  
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)        29   2.8  
SB_48169| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_38078| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_56256| Best HMM Match : Ras (HMM E-Value=8.9e-31)                   27   8.7  
SB_45976| Best HMM Match : MBT (HMM E-Value=0)                         27   8.7  
SB_25618| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_16709| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_51943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +2

Query: 2   GQTPLVGWLYPFMVKEVLGYDIT 70
           G+TPLVGWL P+M+ E+LG  ++
Sbjct: 77  GRTPLVGWLKPYMLPEILGIPVS 99


>SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 839

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
 Frame = +2

Query: 110 TNQADYI----VRFEERKTRTKQSKLDRL--RITQMQIGDYESGETYYSRLY-NMDVGDC 268
           + QA YI       E  K    + K+  L  RI  +Q  D +SGETY ++ + N+D+GD 
Sbjct: 458 SQQAQYIFIHDALMEAAKCGNTEFKVQDLHDRIKALQSRDPDSGETYIAKEFKNLDIGDS 517

Query: 269 NNE 277
           + E
Sbjct: 518 DVE 520


>SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36)
          Length = 1021

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +2

Query: 38  MVKEVLGYDITVHESYN--LERPEDYTNQADYIVRFEERKTRTKQSKLDRLRITQMQIGD 211
           ++ EV G     H ++   L   EDY   A  + + E+           R  +  +++ D
Sbjct: 757 LLVEVDGNSAANHSTFADALFLEEDYQTAAGELQKAEQLSKTLDMCLFGRCGLAHVKLND 816

Query: 212 YESGETYYSRLYNMDV 259
           Y +   Y+SRL   DV
Sbjct: 817 YRTAAQYFSRLSECDV 832


>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
          Length = 3404

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +2

Query: 152  TRTKQSKLDRLRITQMQIGDYESGETYYSRLYNMDVGDCN 271
            T  K S  D L    +Q  D ESG  YY     +   DCN
Sbjct: 2006 TEEKYSGSDHLNARWLQFSDDESGIAYYEVCVGIPSSDCN 2045


>SB_12498| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 495

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = +2

Query: 86  NLERPEDYTNQADYIVRFEERKTRTKQSKLDRLRI--TQMQIGDYESGETYYSRLYNMDV 259
           N E    Y  QA  +  +E     +KQ+ + RL I   Q ++G+YE    YY +   + +
Sbjct: 196 NYEEAMKYYQQALQV--YERTGNESKQASV-RLNIGGVQQRLGNYEEAMKYYQQALQVYI 252

Query: 260 GDCNNEEPTSHE*NILWINVHLVPYDQ 340
              N  +  S   NI  +   L  Y++
Sbjct: 253 STGNESKQASVRLNIGGVQQRLGNYEE 279


>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 140 EERKTRTKQSKLDRLRITQMQI-GDYESGETYYSRLYNMDV 259
           E+RK R K+   DRL +T+M I  +Y   +  Y   Y +D+
Sbjct: 320 EQRKNRGKEEIFDRLIVTEMWIRQEYMPEKARYEAPYEIDI 360


>SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)
          Length = 1500

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +2

Query: 86   NLERPEDYTNQADYIVRFEERKTRTKQSKLDRLRITQMQIGDYESGETYYSRLYNMD 256
            N E+     NQA  I   +E+  RTKQ+  +     + ++ D +S   YY+R  N+D
Sbjct: 936  NAEQESVIQNQAMQITNLQEQLNRTKQTFTE----LESRLTDADSKLEYYARNVNVD 988


>SB_48169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 69  VMSYPSTSFTMNGYSHPTSGVCP 1
           V+++P  + T NGYSHPT+   P
Sbjct: 143 VLAHPMGTHTPNGYSHPTATHTP 165


>SB_38078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 408 IKYLPDDNIVKTLEFISTEANSVDPG 485
           +K++P DN+ K  + IS  +NS  PG
Sbjct: 16  LKWIPADNLCKKSQDISKTSNSCSPG 41


>SB_56256| Best HMM Match : Ras (HMM E-Value=8.9e-31)
          Length = 506

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 47  EVLGYDITVHESYNLERPEDYTNQADYIVRFEERKTRTKQSKLDR 181
           E+  +D + HE Y+  RP  Y N    ++ F+  + +T  S L++
Sbjct: 281 ELTLWDTSGHEDYDHVRPLSYNNVDIVLICFDISRPKTADSILEK 325


>SB_45976| Best HMM Match : MBT (HMM E-Value=0)
          Length = 839

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -1

Query: 173 VYFVWSSSFSLRTERCNLLDLYN 105
           VYF  SSS+S R+ERC+   LY+
Sbjct: 368 VYFT-SSSYSFRSERCSNSSLYD 389


>SB_25618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 435 VKTLEFISTEANSVDPGTEINPMKSI 512
           VKTL+ I+ E + +D  TE+N MKS+
Sbjct: 333 VKTLKSIAQEKDKIDFLTELNLMKSL 358


>SB_16709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 210 TTNRAKHIIPDCTTWTSATVITRNQLHMNKIYCG*MYT 323
           T N A   +   +TWT  T I    +  N+ Y   +YT
Sbjct: 330 TNNMANRAVAKFSTWTKETYIDPKNMPANRYYTPSLYT 367


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,187,218
Number of Sequences: 59808
Number of extensions: 358675
Number of successful extensions: 882
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)