Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b18f
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024493-2|AAB70323.1|  322|Caenorhabditis elegans Hypothetical ...    41   6e-04
Z82055-8|CAB04850.2|  463|Caenorhabditis elegans Hypothetical pr...    31   0.81 
AF332208-1|AAK17979.1|  435|Caenorhabditis elegans nuclear recep...    31   0.81 
Z71177-1|CAA94865.3|  355|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AC006791-3|ABM01864.1|  906|Caenorhabditis elegans Metabotropic ...    28   5.7  
Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z67737-3|CAA91538.2|  399|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical ...    27   10.0 

>AF024493-2|AAB70323.1|  322|Caenorhabditis elegans Hypothetical
           protein F23F1.5 protein.
          Length = 322

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 24/60 (40%), Positives = 36/60 (60%)
 Frame = +2

Query: 2   GQTPLVGWLYPFMVKEVLGYDITVHESYNLERPEDYTNQADYIVRFEERKTRTKQSKLDR 181
           GQ+PLVGWL P+M+ E+L  ++ V E Y  E     ++Q  +I  F ++     QSK+DR
Sbjct: 265 GQSPLVGWLKPWMLPEIL--NVPVPEKYKAESNGQSSSQ--FIESFNQK--HKHQSKIDR 318


>Z82055-8|CAB04850.2|  463|Caenorhabditis elegans Hypothetical
           protein T26H2.9 protein.
          Length = 463

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +2

Query: 74  HESYNLERPEDYTNQADYIVRFEERKTRTKQSKLDRLRITQMQIGDYESGETYYSRL 244
           H +Y  +   DYT   DYI RF E ++ +K  K    R T   + D    ++YYS++
Sbjct: 245 HRTYRQKNRNDYTMILDYINRFPEFESLSKSEKTVLFR-TAAAV-DVLLDQSYYSQV 299


>AF332208-1|AAK17979.1|  435|Caenorhabditis elegans nuclear receptor
           NHR-79 protein.
          Length = 435

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +2

Query: 74  HESYNLERPEDYTNQADYIVRFEERKTRTKQSKLDRLRITQMQIGDYESGETYYSRL 244
           H +Y  +   DYT   DYI RF E ++ +K  K    R T   + D    ++YYS++
Sbjct: 217 HRTYRQKNRNDYTMILDYINRFPEFESLSKSEKTVLFR-TAAAV-DVLLDQSYYSQV 271


>Z71177-1|CAA94865.3|  355|Caenorhabditis elegans Hypothetical
           protein AC3.1 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 432 YYHPASILSLIIPFFNMIIRI*KNG 358
           YYH  S++S +I FF+M I + ++G
Sbjct: 27  YYHVISVVSTVISFFSMYIILFQSG 51


>Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical
           protein F43A11.3 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = -2

Query: 439 FTILSSGKYFISYHPFF*YDY----PNLEEWNTSIS 344
           F IL S   F SYHP F   Y      LE WN ++S
Sbjct: 62  FYILLSSFLFYSYHPLFCKGYSIFSQALESWNINLS 97


>AC006791-3|ABM01864.1|  906|Caenorhabditis elegans Metabotropic
            glutamate receptorfamily protein 3, isoform c protein.
          Length = 906

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 125  YIVRFEERKT-RTKQSKLDRLRITQMQIGDYESGETYYSRLYNMDVGDCN 271
            YIV F+  K  RT+QS + RL   QM  G++   +   +   + D   CN
Sbjct: 857  YIVLFQPYKNVRTRQSAVGRLVNQQMSRGEFSHEQRSGTTANSSDPSACN 906


>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical protein
            F09C3.1 protein.
          Length = 1391

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 283  WFLVITVADVHVVQSGIICFARFVVTNLHLSDPQSI-*FTLFGP 155
            WFL +  A+VHV+ +  I +    V N+ L +  S+  FT F P
Sbjct: 1026 WFLSLLNANVHVIHNKFIDYINKNVRNVALDEIYSMNEFTQFDP 1069


>Z67737-3|CAA91538.2|  399|Caenorhabditis elegans Hypothetical
           protein T01H10.3 protein.
          Length = 399

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 317 HLSTVYFIHVKLVPRYYSRRRPCCTVWNNMF 225
           H+S++Y+ H   VP+YY        +  N+F
Sbjct: 13  HVSSIYYNHSLYVPKYYDFLETQTNLTKNLF 43


>AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical
           protein C33E10.6 protein.
          Length = 1014

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +2

Query: 98  PEDYTNQADYIVRFEERKTRTKQSKLDRLRITQMQIGDYESGETYYSRLYNMDVGD 265
           P +Y N      R++E +  TK    D L        DYE  +  Y ++   ++GD
Sbjct: 462 PYEYMNS---FKRYDETELPTKDKFYDELNNKHCSEDDYEYAKLVYKKMNCKNIGD 514


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,670,025
Number of Sequences: 27780
Number of extensions: 284045
Number of successful extensions: 830
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)