Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12b17f
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   7.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.9  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   9.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.9  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 624 KDVICLCFC 598
           K +IC CFC
Sbjct: 74  KSIICKCFC 82


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 624 KDVICLCFC 598
           K +IC CFC
Sbjct: 522 KSIICKCFC 530


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/43 (23%), Positives = 16/43 (37%)
 Frame = +1

Query: 361 YELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPEL 489
           YE+       +    L      S  Y V+++   YD+ N   L
Sbjct: 211 YEIMKDNLLLYNHARLMSQDNHSKEYLVSIMFSHYDRNNNGNL 253


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
 Frame = +1

Query: 328 KNIQLYKMRNGYELG------PSAAASFT 396
           KNI + ++R GY  G      P  AA FT
Sbjct: 313 KNISVKELRRGYVAGDSKNQPPRGAADFT 341


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
 Frame = +1

Query: 328 KNIQLYKMRNGYELG------PSAAASFT 396
           KNI + ++R GY  G      P  AA FT
Sbjct: 24  KNISVKELRRGYVAGDSKNQPPRGAADFT 52


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 361 THYAFYTTEYFLQYIQQ 311
           T+Y+ + T+ F QYI +
Sbjct: 385 TYYSKHNTQQFTQYIPE 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,508
Number of Sequences: 438
Number of extensions: 3412
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)